Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1061 ATGCAAGAACAAGATTCCTGTTCCGGCCCGGGTGAAGGGGTATCCATTCCGGAATTTACCTTGACTTCTCCTGATCTAGTTATCTGTGCTGGTTCTCCTGATATTCCAGTAGACAGCTACTGTGATTCACCAGAATTCTTGGATATCAAGGGTTGTAAACCTATGGAATCTTCCATGGAGCTTTCCTTTGAAAATAGCTTTTCTGGAATTGAGGTTAACTACAATCAGAGGACCCCATCTGTTAGATTTTCCAAGTTGTGTGAAACCTATGAGGAAGAACTGTCCCCAGGATCTTCCTTTGAGTTGGCTCCTCCTCCAGCTACGACTTCTCTGCAATCTGAAGAACTCCTTCAAGCTGTTAGTATCAATGCAGGTTCCTCAAATGATGCTGTCACTTTGGATGGTATGAACTATGTGGAAGACAATTGCTACAACGGTGGTGATACCATTAGGTCTGATGAAATTGAACATCCTCTATACCAAACGGCTCGTTATGGGAACTTTTATTACAATTTCTCATCATTGGAACCTGGGAATTATGTTGTTGACCTACATTTTGCTGAAATTGTATTTACCAATGGCCCTCCTGGTATGAGGGTGTTCGATGTCTATTTGCAAGACCAGAAGGTTGTTTCTGGCCTGGATATATATGCTCGTGTTGGTGGGAATAAGCCTCTCATTGTATCTGACCTTAAAGCTTCTGTAGATGTAAAAGATTTAACCGTTAGATTTGAAGGACTGATGGGGAGGCCAATTGTTTGTGGTATTTCTGTGAGGAAAGATCTTCCTTCAAATATTAAAGAAGTTGAACTGGTCGAAGATGTGGGATCTTCTCAACTAGAAAACTCAGAGATGTCCAAAGATTGTAGTGACTTGATAGTGAAAGAGAAGAAGTACATAGAGCTCCAAAAGGATTTTGAGCTCATGAAGAATGAGCTAGCAGCAGCAAAGAAAGATATGGAGGAACTTAGAAAGGAAAACAATCAAAAGGGTAGAGAATGTCAAGAAGCTTGGAAGTCTCTAAATGACCTACAAAATGAGCTCATGCGCAAGTCAATGCATGTTGGATCTCTTGCTTTTGCCATTGAGGGACAGGTGAAAGAGAAGAGCAGATGGTTTTCTTCATTGAGGGACCTTACCAGAAAAGTAAAGATTATGAAAATGGAAAACATCAAACTATCGGAGGAGGCGCTTGCATTCAAGAACTGCTTTGTGGATATGAATGAAATGACTTCTAAAATTCAGACAGCATTTAAACAGCAATTAGATTTGCAAGAAAACTTGAAGACTAAATTTGTTGAAGGAGCTAAGGAACGGAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATTAGGGTCTTTTGTCGGTGTAGGCCCTTGAATACAGAAGAAATTGCATCTGGAGCTCCAATGGTTGTTGATTTTGAGTCGGCCAAAGATGGCGAGTTGATTGTTAAGTCAAATGGGGCTCCCAGAAGGATCTTTAAATTTGATGCTGTATTTGGTCCTCAGGCAAATCAAGGAGATGTCTTTGAAGATACTGCGCCATTTGCGGCTTCAGTTCTAGATGGGTACAATGTTTGCATATTTGCATATGGCCAAACCGGAACTGGAAAAACTTTTACAATGGAGGGCACTGAAGGAGCTCGTGGAGTCAATTATAGGATTCTTGAGGAGTTGTTTCGCCTAACAAAGGAACGGCAGAAGCTACATCGATATAAAGTATCTGTTAGTGTCTTGGAAGTGTATAATGAACAAATACGAGACTTGCTAGTCTCAGGATCTCAGTCAGGGAACAGTGCAAAAAGGCTCGAAGTAAGACAAATCAGTGAAGGAATACATCATGTTCCTGGCATGGTTGAGGCCCCTGTCGACAACATGAATGAAGTTTGGGAAGTTTTACAAACGGGCAGTAACGCAAGAGCTGTTGGTTCAACCAATTGTAATGAGCACAGCAGCCGATCCCACTGCATACATTGTGTGATGGTGAAGGGGGAGAATTTGCTTAATGGGGAATGCACTAGCAGCAAACTCTGGTTGGTGGACTTGGCAGGTAGCGAGCGGATTGCTAAAGTAGAAGTACAGGGAGAACGACTCAAGGAAACACAAAATATTAACAGATCTCTTTCTGCACTTGGTGATGTAATATCTGCTCTTGCAACAAAAAGCCCTCATGTTCCTTTCAGGAACTCCAAGCTCACTCACTTGCTTCAAGATTCACTAGGGGGAGATTCGAAGACACTCATGTTCGTACAGATCAGTCCCAACGAAAATGACTTGAATGAGACTCTTTGCTCATTGAACTTTGCAAGCAGAGTAAGAGGAATCGAGTTGGGTCCTGCAAAGAGACAGCTTGATATGTCTGAATTCCTTAAATGCAAACAGATGACTGAGAAAACAAAGCAGGATATGAAGAGTAAAGATCTACAGATCAGAAAAATGGAAGAAACAATTCATGGATTAGACTTGAAGATGAAGGAAAAAGATCAAAAAAACAAAAATCTACAAGACAAGGTCAAAGAACTTGAAGCTCAACTTCTTGTTGAAAGAAAGCTAGCACGTCAGCATGTCGACACCAAAATAGCAGAGCAACAAATGAAAACCGAATCGGAAGACCACAAGCCTGCACCAGTGAGGCCTCAACTTGCTAGTAGACCATTTGGTGGTCAAAAAAATCTCCATGGATCATTCAACAGCATACTTGGAAAGGAGCAAATAAATCTCAGTCGCCCACTAAACGAAAACAACGGCTTCAAACCGTCATTTCCCTTTCCTCCAGTAGATGGTGCCATCAAGTACACTGATTCCACAGAGAAGGAGAACAATCCAGAGATGGTTGAACGATCTTTTGTGCTGCCACCAAAGAGGACAGGAAGAGCGTCCATTTGCACAATGGCCCGACGTGTACCGATGGCCCTTGCTCCTAGGAGAAACTCCCTAGTCCCTCTACGAAATATACCAAGCTCTACTCATCTCCCATCACCCATGTTGTCATTGGCACCATGTCAAGCTGACAAGATAGACGAAGGTGACGAATCAGATGACCATAACTGCTTACCTGAACAGGCACAATGCGACAGTCCTAAAGAGATAAAATATGGAGGTAAAAAGTTGAGCAACATGTTGAGACGAAGCCTTCAAAAGAAGATACAAATGAAGTCTCCAATGCAACAACATATGAGACGAGGTGGTATCAATCTAGGGATGGAGAAAGTCAGGGTCTCCATCGGAGGCCGAGGAAGGTTGGCAGCGCACAGGGTGTTGTTAGGGAATGGTAAGAGAGTAACTAAAGAAACTCAAAGTAAGAGGGAAAAGGAGAGGGGTTGGAATATGGGAACAACAGTTGGGAGAACTGTTATTTAG 3369 42.27 MQEQDSCSGPGEGVSIPEFTLTSPDLVICAGSPDIPVDSYCDSPEFLDIKGCKPMESSMELSFENSFSGIEVNYNQRTPSVRFSKLCETYEEELSPGSSFELAPPPATTSLQSEELLQAVSINAGSSNDAVTLDGMNYVEDNCYNGGDTIRSDEIEHPLYQTARYGNFYYNFSSLEPGNYVVDLHFAEIVFTNGPPGMRVFDVYLQDQKVVSGLDIYARVGGNKPLIVSDLKASVDVKDLTVRFEGLMGRPIVCGISVRKDLPSNIKEVELVEDVGSSQLENSEMSKDCSDLIVKEKKYIELQKDFELMKNELAAAKKDMEELRKENNQKGRECQEAWKSLNDLQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRKVKIMKMENIKLSEEALAFKNCFVDMNEMTSKIQTAFKQQLDLQENLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNTEEIASGAPMVVDFESAKDGELIVKSNGAPRRIFKFDAVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLHRYKVSVSVLEVYNEQIRDLLVSGSQSGNSAKRLEVRQISEGIHHVPGMVEAPVDNMNEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLNGECTSSKLWLVDLAGSERIAKVEVQGERLKETQNINRSLSALGDVISALATKSPHVPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLNETLCSLNFASRVRGIELGPAKRQLDMSEFLKCKQMTEKTKQDMKSKDLQIRKMEETIHGLDLKMKEKDQKNKNLQDKVKELEAQLLVERKLARQHVDTKIAEQQMKTESEDHKPAPVRPQLASRPFGGQKNLHGSFNSILGKEQINLSRPLNENNGFKPSFPFPPVDGAIKYTDSTEKENNPEMVERSFVLPPKRTGRASICTMARRVPMALAPRRNSLVPLRNIPSSTHLPSPMLSLAPCQADKIDEGDESDDHNCLPEQAQCDSPKEIKYGGKKLSNMLRRSLQKKIQMKSPMQQHMRRGGINLGMEKVRVSIGGRGRLAAHRVLLGNGKRVTKETQSKREKERGWNMGTTVGRTVI 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25156527 25161661 - ClG42_07g0106100.10 Clacu07g1061 253659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1061 1122 ProSitePatterns Kinesin motor domain signature. 678 689 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Clacu07g1061 1122 ProSiteProfiles Kinesin motor domain profile. 452 778 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 SMART kinesin_4 450 786 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 Coils Coil 376 396 - -
Clacu07g1061 1122 Coils Coil 299 333 - -
Clacu07g1061 1122 Coils Coil 813 854 - -
Clacu07g1061 1122 PRINTS Kinesin heavy chain signature 728 749 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 PRINTS Kinesin heavy chain signature 526 547 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 PRINTS Kinesin heavy chain signature 679 697 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 PRINTS Kinesin heavy chain signature 648 665 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu07g1061 1122 Gene3D Kinesin motor domain 395 780 IPR036961 -
Clacu07g1061 1122 Pfam Malectin domain 120 252 IPR021720 -
Clacu07g1061 1122 Gene3D - 118 262 - -
Clacu07g1061 1122 PANTHER KINESIN-LIKE PROTEIN KLP-3 78 1098 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Clacu07g1061 1122 CDD KISc_C_terminal 450 780 - -
Clacu07g1061 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 815 IPR027417 -
Clacu07g1061 1122 FunFam kinesin-like protein KIN-14R 397 780 - -
Clacu07g1061 1122 Pfam Kinesin motor domain 458 778 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1061 K27887 - - csv:101222343 2035.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1908 Clacu-Chr1:31187827 Clacu07g1061 Clacu-Chr7:25156527 6.80E-64 dispersed
Clacu02g1620 Clacu-Chr2:29654241 Clacu07g1061 Clacu-Chr7:25156527 2.00E-140 dispersed
Clacu03g0511 Clacu-Chr3:5342736 Clacu07g1061 Clacu-Chr7:25156527 8.00E-81 dispersed
Clacu03g1674 Clacu-Chr3:30480070 Clacu07g1061 Clacu-Chr7:25156527 3.40E-66 dispersed
Clacu06g0719 Clacu-Chr6:8389403 Clacu07g1061 Clacu-Chr7:25156527 4.80E-28 dispersed
Clacu07g1061 Clacu-Chr7:25156527 Clacu10g1112 Clacu-Chr10:23529945 2.60E-85 dispersed
Clacu07g1061 Clacu-Chr7:25156527 Clacu05g1643 Clacu-Chr5:24363613 2.70E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47