Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1066 ATGAACATGAAATGGACCAACGTCATCGATTTGTTGGTTGAAAAAATGAAGGCAGCTATTTGGTTTAAGGATGACGATGAACTTGAGTTTGGAAGTGAATTCTGGGTTCAGGAAATCCGGAAGATAAGTAGTTTCTCTGGAGAATTTTCGAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACCGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGAGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTCGCCCAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGCCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCGAGCAACATTCTTCTTGATCATGACCTCTCTCCTAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCGATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTTGGAGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACAAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTTGATTTGTCCTTAAATGGCGACTTCGATGCAGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACACAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACAGGAGAGATGAGTATTGAAGACAGAAAGATAACGAAACCGGGGCTGATTTCGGACTTCATGGATCTAAAAGTAAAGAATCCAGAGGAAAAGAAAGGGAATAGAGAGGGGGTGTCTTCTGATAGTCTATCCTCTGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACATCTACAACCTTCACTGCACAATATGACAGGAATACTTTCTCATCTGTAATGTCGGCCATGGGGGTTGAGGCCTTGACCCATAGGAAGTGGGTTGCTGCAAAAGGAAAGAGGCCTACCTCAATCTCAGCCTCAAAAGCCAAGGCATGCACCTTGAGCCACTCAGCACAATTTTCTCTCTTCTCGTGTGGCTCATGGGCTTCTTTTTCTGGTAGTCTAAGGGAAGATCAAGCTGCCATGGAGGATATAGGTCTTTTCAAGCAAGGATGGAAATGGTTTCAGTCGCAGAAACACACTTACTCGCGTGCTCAAACTGCGTTTTTTAGTTTCAGAGACAAAGTTGGGATGTTTATTGAGAGACATTGGCCAACAGTGTGCCGAGGCTGTGCGTGGATGGGGAGTTTACTGCGTTTAGCAGTGCTTCAATGGTGGGACTGCATTATAAAAGGCTTCAGGTCGCTCATTGGATTAGGCTCTGCTGCATTGCTCCTTATAATGTGGAGTTGCTTTCTTAGTTTAACGTCCATGTCCTGCCTGGTTTACGTTCTTCTCAGTATGGGAGCTGCAGGAGTTGCTGTTCAATACCTGGGTTACACTCCTGGACTTTTTATTGTGGGACTCTTTGCTATTCTAGTATTGTGGATGTATGCTAACTTTTGGATTACAGGGACGTTGTTTATAGTTGGAGGTTACTTGTTCTCTCTTAATCATGCACGGTTGGTGGTCTTAATGGCAACTGTGTATGCTATATATTGTGTTAAAGTTCGTGTTGGATGGCCGGGTGTCTTTCTCTCAATAAACCTTGCATTTCTATCAAACGATGCATTAAATTATTTGCTCCAATGGTGCGATAAGGCGAGTGAGAGCTCACATTTCGAAGAGCAGAAACAATCTGAAACAGTTTCGGAAGATGAATTCTCCGGAGAGTGTGAATACTCTGTTCCTACCAGTGAGTCTGAGAAGGTGCATTCATGTAAATCATCCAGCCCAACTGTTGTGACATCTGTTGTTGATAACCAGAAAGAGGCTTCTTGTAGCAAGGTGACCAAAGATCAGACTGATTCAATTGATGAGATGAAAAGGATATTAAATAGTGGGGACCATTATGAAGCACTGGGATTTCCACGTCACAAGAAGATTGATGTCATTGTTTTAAAAAAGGAATACAGAAAAAAGGCTGTGCTTGTGCATCCTGATAAAAATATGGGAAGCCCGCTGGCTAGCGAGTCATTTAAGAAGCTTCAGTGTGCATATGAGGTGCTTTCTGACTCTGTGAAGAAAAGAGACTATGATGAGCAATTGAGAAAGGAGGAATCGAAGACCAAAAGTGTCTGCCAGAGGTCCCAGTCCTATGGGACTTCACAACAGGTTGTGCATAATCTTTATACGATTGATACTGACATTTTATGGTGGCTGCCGAAGTTGACCACTAGAGGTAGTCGGCAGAGCAAATCGCCAAAGTTGGGTGTCATAGGTGGTCTTTGCCAGAGGAGTCAAGACGTATACAGTGCAGTAAATGCGGCCATTCACACATATGGGTCTGCACAAATAGGAATAAGACGAAGGCAAGATGGTGTCAGGATTGTTGTCAATATCATCAAGCTAAGGATGGAGACGGATGGGTCGAGTATAAAGATGGATATTCCACGTGCTTTCGTTTGTGCTGAGAGCAAAATCTTTGATGTGTCCGAATGGGCAATTTGTCAAGGAATGGCTTGCAGGCCCAATACTCATCGCCCAAGCTTTCATGTAAACATGGTCGGTTTAGGGAAAACCACGCAACGATCGAAGTCGAGTAGATTTCCTTGGGAATTGGATGCTGAAATGATGGATGAAGACGAGGAAGAATTTGAGCTGTGGCTTCAGGAGGCTTTAGCCTCTGGACTCTTCTGCGAAACCTCAAAACGGAGAAAGAGCTGGAGTCCATTCAAGTTGGGCCAGAAGATAGGGAGCAAACAATGGCGAAGAACATCATGCTAG 3189 43.09 MNMKWTNVIDLLVEKMKAAIWFKDDDELEFGSEFWVQEIRKISSFSGEFSSMQNVKFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLKDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDLSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLISDFMDLKVKNPEEKKGNREGVSSDSLSSGSNILGNSTMSSEASTVTSTTFTAQYDRNTFSSVMSAMGVEALTHRKWVAAKGKRPTSISASKAKACTLSHSAQFSLFSCGSWASFSGSLREDQAAMEDIGLFKQGWKWFQSQKHTYSRAQTAFFSFRDKVGMFIERHWPTVCRGCAWMGSLLRLAVLQWWDCIIKGFRSLIGLGSAALLLIMWSCFLSLTSMSCLVYVLLSMGAAGVAVQYLGYTPGLFIVGLFAILVLWMYANFWITGTLFIVGGYLFSLNHARLVVLMATVYAIYCVKVRVGWPGVFLSINLAFLSNDALNYLLQWCDKASESSHFEEQKQSETVSEDEFSGECEYSVPTSESEKVHSCKSSSPTVVTSVVDNQKEASCSKVTKDQTDSIDEMKRILNSGDHYEALGFPRHKKIDVIVLKKEYRKKAVLVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESKTKSVCQRSQSYGTSQQVVHNLYTIDTDILWWLPKLTTRGSRQSKSPKLGVIGGLCQRSQDVYSAVNAAIHTYGSAQIGIRRRQDGVRIVVNIIKLRMETDGSSIKMDIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLGKTTQRSKSSRFPWELDAEMMDEDEEEFELWLQEALASGLFCETSKRRKSWSPFKLGQKIGSKQWRRTSC 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25214318 25231939 - ClG42_07g0106600.10 Clacu07g1066 253664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1066 1062 FunFam cold-responsive protein kinase 1 146 357 - -
Clacu07g1066 1062 PANTHER OS03G0832900 PROTEIN 451 858 - -
Clacu07g1066 1062 SMART serkin_6 70 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1066 1062 CDD DnaJ 770 826 IPR001623 -
Clacu07g1066 1062 Pfam Cleavage inducing molecular chaperone 951 988 IPR032843 -
Clacu07g1066 1062 SUPERFAMILY Chaperone J-domain 766 838 IPR036869 -
Clacu07g1066 1062 SUPERFAMILY Protein kinase-like (PK-like) 44 341 IPR011009 -
Clacu07g1066 1062 Gene3D DnaJ domain 756 859 IPR036869 -
Clacu07g1066 1062 FunFam cold-responsive protein kinase 1 41 145 - -
Clacu07g1066 1062 ProSiteProfiles dnaJ domain profile. 770 837 IPR001623 -
Clacu07g1066 1062 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524(InterPro)
Clacu07g1066 1062 Gene3D Phosphorylase Kinase; domain 1 42 145 - -
Clacu07g1066 1062 PRINTS DnaJ domain signature 792 807 IPR001623 -
Clacu07g1066 1062 PRINTS DnaJ domain signature 809 829 IPR001623 -
Clacu07g1066 1062 CDD STKc_IRAK 76 343 - -
Clacu07g1066 1062 SMART dnaj_3 769 829 IPR001623 -
Clacu07g1066 1062 Pfam DnaJ domain 770 834 IPR001623 -
Clacu07g1066 1062 ProSitePatterns Nt-dnaJ domain signature. 814 833 IPR018253 -
Clacu07g1066 1062 ProSiteProfiles Protein kinase domain profile. 70 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1066 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1066 1062 Pfam Protein kinase domain 72 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1066 1062 Gene3D Transferase(Phosphotransferase) domain 1 146 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1029 Clacu-Chr7:24717165 Clacu07g1066 Clacu-Chr7:25214318 5.50E-131 dispersed
Clacu07g1066 Clacu-Chr7:25214318 Clacu09g2282 Clacu-Chr9:37566657 6.20E-89 dispersed
Clacu11g1639 Clacu-Chr11:27545497 Clacu07g1066 Clacu-Chr7:25214318 8.70E-09 dispersed
Clacu03g0595 Clacu-Chr3:6148290 Clacu07g1066 Clacu-Chr7:25214318 1.20E-91 transposed
Clacu04g0939 Clacu-Chr4:23639879 Clacu07g1066 Clacu-Chr7:25214318 7.80E-100 transposed
Clacu06g0420 Clacu-Chr6:5007161 Clacu07g1066 Clacu-Chr7:25214318 1.60E-59 transposed
Clacu10g2164 Clacu-Chr10:34798910 Clacu07g1066 Clacu-Chr7:25214318 7.00E-93 transposed
Clacu02g0012 Clacu-Chr2:174345 Clacu07g1066 Clacu-Chr7:25214318 5.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73700 PF00069 Pkinase 2.80E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1066 K09534 - csv:101216675 935.636