Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1089 ATGCTTCGCAGCTTAATTCCTCATTCCCCCATCAATTCCACCTCCAATTCCCCATCCTCCATGAACTCCAAACGCTCCGACCCCGACTCCTCCCCCGACCACCCTTCTTCCAAGAGGCTCAATTCACGTCCCAACAACTTCTCCGCCCCCGGTAAGGCCGTCCCCCACCCAGACTTCGACGAAGACCAAGAGGACCCACCTCTCGTCGACGGCAGTGACTCCACTGGTTTGAGATTGCTAGGGCTTCTCCTTCAATGCGCCGAGTGCGTCGCCATCGATAATCTCCAGGAGGCCAACGATCTCTTGCCGGAGATCTCCGAGCTCTCCTCGCCCTTCGGAACCTCGCCTGAGCGAGTCGGCGCGTACTTCTCCCACGCGCTTCAAGCCAGAGTTATAAGCTCCTGTTTGGGAACATACTCGCCGTTAACCATCAGAACGTTGAATCAAACTCAGTCGCAGAGAATTTTCAACGCCCTCCAATCCTACAATTCCATCAGTCCGTTGATTAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGTGAAGATCGAGTCCACGTGATCGACCTCGACGTAATGCAAGGTCTCCAATGGCCTGGATTGTTCCACATCCTCGCTTCCCGGCCAAAGAAGATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGAGTTGCTTCAATCAACCGGAAGAAGACTGGCGGATTTTGCAACTTCTCTAGGTCTCCCCTTCGAATTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACAAACCCCAATCAACTGGAATTGAGAGCCGGCGAGACAGTTGTAGTTCACTGGATGCACCATTGCTTATACGACGTAACAGGAAGCGATATAGGTACGCTTAGATTACTTTCAAATCTAAAACCAAAACTAATCACCATTGTTGAACAAGATCTGAGTCATGGAGGTAGTTTTTTAGGAAGATTTGTAGAGGCTCTTCATTATTACAGCGCGTTATTCGACGCGCTTGGTGATAGTTTAACCATGGATAATCTGGAAAGACATGTGGTAGAGCAACAATTGTTTGGTTGTGAGATTAGGAACATTATCGCCGTTGGTGGACCCAAAAGAACCGGTGAAGTTAAAGTCGAAAGATGGGGCGATGAACTGAAACGGGTCGGGTTTAAACCCGTTTCTCTTGGAGGTAACCCGGCTGCTCAAGCCAGTTTACTTCTTGGAATGTTTCCTTGGAAAGGCTATACTCTTGTTGAAGAAAATGGGTGCCTTAAACTTGGATGGAAGGACTTATCTCTTCTCACAGCCTCCGCCTGGCAGCCCTCCGATTGA 1332 49.92 MLRSLIPHSPINSTSNSPSSMNSKRSDPDSSPDHPSSKRLNSRPNNFSAPGKAVPHPDFDEDQEDPPLVDGSDSTGLRLLGLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFSHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSELLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPNQLELRAGETVVVHWMHHCLYDVTGSDIGTLRLLSNLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLTMDNLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFKPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25438894 25440225 + ClG42_07g0108900.10 Clacu07g1089 253687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1089 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 439 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Clacu07g1089 443 MobiDBLite consensus disorder prediction 7 26 - -
Clacu07g1089 443 Pfam GRAS domain family 81 440 IPR005202 -
Clacu07g1089 443 ProSiteProfiles GRAS family profile. 70 440 IPR005202 -
Clacu07g1089 443 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0554 Clacu-Chr4:18834148 Clacu07g1089 Clacu-Chr7:25438894 3.90E-134 dispersed
Clacu07g1089 Clacu-Chr7:25438894 Clacu09g0811 Clacu-Chr9:7374846 1.30E-88 dispersed
Clacu07g1089 Clacu-Chr7:25438894 Clacu10g2088 Clacu-Chr10:34216627 1.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48048 PF03514 GRAS 3.20E-116 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1089 K27742 - csv:101212169 739.184