Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1102 ATGAATAATATTATCAAGTATAATAATCTCCTCACCAATCTTGCTCTATCTTCTCTTCTCCCTCTCCTTGCTTTCCTCTTCATGATCAATCCTACCCCTCCCTTCCTTTCCAATCTCGTCGCCTTTCGTGACTCTGTCGATTGTCGTCACCACCACCATCACCATCATAAAAACGCAACTGACGAACAGGACCAAACAACGATAACTTCCATTTGTGATAACTTCCCGACCACCCTCCTCCCACCAGAAACCACCAACACTTCTGTTTTTTGTGTTGACCGAAACGGTTGTTGCAACTTCACAACGGTTCAAGCAGCAGTTGATGCTGTGCCAAACTTGAGCTTCAAACGAAACCTAATTTGGATCAACGCTGGAATTTACTACGAGAAGGTGATGGTTCCAAAATCTAAACCAAACGTGACATTTCAAGGACAAGGCTATACAACCACCGCCATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACCTTTTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATTAGAATCGGCGGAGACCAGGCGGCATTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGTGGTCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTCCCGCAAGGATCGAGGTTTGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTGTTTTTGTTAATTGCAGCATCGGCGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGGCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCAAACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTTTGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTACTCATTGTTTTAA 1182 48.65 MNNIIKYNNLLTNLALSSLLPLLAFLFMINPTPPFLSNLVAFRDSVDCRHHHHHHHKNATDEQDQTTITSICDNFPTTLLPPETTNTSVFCVDRNGCCNFTTVQAAVDAVPNLSFKRNLIWINAGIYYEKVMVPKSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSRFVNGAVTAHGRASADENSGFVFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAAEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPFVQRLNDTQVSSFLNLSFIDADQWLQPYSLF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25569731 25574437 + ClG42_07g0110200.10 Clacu07g1102 253700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1102 393 Gene3D - 88 392 IPR012334 -
Clacu07g1102 393 SUPERFAMILY Pectin lyase-like 88 390 IPR011050 -
Clacu07g1102 393 FunFam Pectinesterase 84 392 - -
Clacu07g1102 393 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Clacu07g1102 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 66 388 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Clacu07g1102 393 Pfam Pectinesterase 92 383 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1102 Clacu-Chr7:25569731 Clacu09g2139 Clacu-Chr9:36162530 3.20E-67 dispersed
Clacu07g1102 Clacu-Chr7:25569731 Clacu08g1655 Clacu-Chr8:26274308 3.80E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1102 - - - 0.0