Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1118 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGCATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTAAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTAATTTATCAGACAGACCTGCGAGAGGTGTGGGTGGTGAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGGTCTGCTAATTTTAGATTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACTCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGTGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGATAGATTTGTTTGTTTACTAG 1929 44.27 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDAWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPNLSDRPARGVGGEDETQQGRDLLPASLASETHTQCYGDRSANFRLNTQPSGPSDNLQDNQSVSSTHDMAGSCDNSRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGIDLFVY 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25819122 25824382 - ClG42_07g0111800.10 Clacu07g1118 253716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1118 642 MobiDBLite consensus disorder prediction 321 372 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 181 198 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 277 293 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 161 180 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 345 372 - -
Clacu07g1118 642 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 582 - -
Clacu07g1118 642 SUPERFAMILY RING/U-box 509 580 - -
Clacu07g1118 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Clacu07g1118 642 Pfam Ring finger domain 530 573 IPR001841 -
Clacu07g1118 642 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 49 65 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 1 79 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 224 293 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 224 254 - -
Clacu07g1118 642 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Clacu07g1118 642 SMART ring_2 531 572 IPR001841 -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 330 344 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 1 18 - -
Clacu07g1118 642 MobiDBLite consensus disorder prediction 161 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2116 Clacu-Chr1:32833391 Clacu07g1118 Clacu-Chr7:25819122 1.60E-08 dispersed
Clacu06g1282 Clacu-Chr6:23777802 Clacu07g1118 Clacu-Chr7:25819122 3.70E-42 dispersed
Clacu07g1118 Clacu-Chr7:25819122 Clacu09g1184 Clacu-Chr9:11610186 4.50E-10 dispersed
Clacu07g1118 Clacu-Chr7:25819122 Clacu01g1628 Clacu-Chr1:28369228 2.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1118 - - - 0.0