Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1132 ATGGGGCAGTCGGTCACACGCTTGAAAACATCCCTCTTCGCACGTGCCACAGCGCCTCTTCAGTCTCACTCCAACGCCTCTCTGTCGAATATTCCACATGCTCTCAGACTCTCGCCCTCACTCTCTCTCTCTCTCTCTAGAAGCAAGCTCCAAACTCAGCCTCTCGGTGAGATAGATTTTGCCAAACCTCTCACGGACCGACCATTTTCTTTCTCTCTTCCACCTCTCTCTTTTACTCACCTGCATTTCTCTCCAATTGGATCTAAGATCGTATTGCAGGTTCTGTTTTGTTTCTTCTGGTTTGAGCAGTTTCGGGTGGAGAGTGGTTGTAGTTCTGGTGCGCTACTGCATCTATTGAATACTATGATATTTAAGTCTTGTTTGGCCGAGGAAGAGTCGTTAAATGATTTGAGAGCCACCATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTATGACAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTTGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGCGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATTGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGACGAGGCCCTTCATGAAAGATCTGAGCAATTGGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGACGATAAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTGCAGTCGGAAACTCTTGATGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACTCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 2208 43.66 MGQSVTRLKTSLFARATAPLQSHSNASLSNIPHALRLSPSLSLSLSRSKLQTQPLGEIDFAKPLTDRPFSFSLPPLSFTHLHFSPIGSKIVLQVLFCFFWFEQFRVESGCSSGALLHLLNTMIFKSCLAEEESLNDLRATMGICLVKCSGLLVLHVLLLCMTMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25947298 25960232 + ClG42_07g0113200.10 Clacu07g1132 253730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1132 735 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 526 728 - -
Clacu07g1132 735 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515(InterPro)
Clacu07g1132 735 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 169 331 - -
Clacu07g1132 735 SMART serkin_6 450 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1132 735 Pfam Protein kinase domain 452 715 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1132 735 ProSitePatterns Protein kinases ATP-binding region signature. 456 478 IPR017441 GO:0005524(InterPro)
Clacu07g1132 735 Gene3D Phosphorylase Kinase; domain 1 426 525 - -
Clacu07g1132 735 Pfam Leucine rich repeat N-terminal domain 171 209 IPR013210 -
Clacu07g1132 735 Gene3D Ribonuclease Inhibitor 170 356 IPR032675 -
Clacu07g1132 735 ProSiteProfiles Protein kinase domain profile. 450 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1132 735 SUPERFAMILY Protein kinase-like (PK-like) 434 717 IPR011009 -
Clacu07g1132 735 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 424 525 - -
Clacu07g1132 735 SUPERFAMILY L domain-like 170 333 - -
Clacu07g1132 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1132 735 Gene3D Transferase(Phosphotransferase) domain 1 526 724 - -
Clacu07g1132 735 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 301 719 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1745 Clacu-Chr6:28042147 Clacu07g1132 Clacu-Chr7:25947298 6.30E-123 dispersed
Clacu07g1132 Clacu-Chr7:25947298 Clacu11g1806 Clacu-Chr11:29224899 1.20E-227 dispersed
Clacu11g1674 Clacu-Chr11:27981494 Clacu07g1132 Clacu-Chr7:25947298 7.80E-54 dispersed
Clacu07g1132 Clacu-Chr7:25947298 Clacu01g1511 Clacu-Chr1:27209011 2.30E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73702 PF00069 Pkinase 4.00E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1132 - - - 0.0