Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1150 ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAGTATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACACGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTAGACCTTACCACATTGGAGGGGTATGGCCAACTTATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2094 46.56 MANRGGGSFLPSSIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATRHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26172365 26175944 - ClG42_07g0115000.10 Clacu07g1150 253748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1150 697 MobiDBLite consensus disorder prediction 427 459 - -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 365 406 - -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 574 590 - -
Clacu07g1150 697 FunFam Auxin response factor 127 231 - -
Clacu07g1150 697 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Clacu07g1150 697 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu07g1150 697 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Clacu07g1150 697 SUPERFAMILY DNA-binding pseudobarrel domain 116 258 IPR015300 -
Clacu07g1150 697 SUPERFAMILY CAD & PB1 domains 580 662 - -
Clacu07g1150 697 Gene3D - 581 673 - -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 527 590 - -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 419 511 - -
Clacu07g1150 697 Gene3D - 126 230 IPR015300 -
Clacu07g1150 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu07g1150 697 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Clacu07g1150 697 FunFam Auxin response factor 290 361 - -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 384 406 - -
Clacu07g1150 697 Gene3D - 290 361 - -
Clacu07g1150 697 ProSiteProfiles PB1 domain profile. 586 667 IPR053793 -
Clacu07g1150 697 MobiDBLite consensus disorder prediction 467 496 - -
Clacu07g1150 697 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Clacu07g1150 697 Pfam AUX/IAA family 576 622 IPR033389 -
Clacu07g1150 697 Pfam AUX/IAA family 633 669 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0174 Clacu-Chr1:1746566 Clacu07g1150 Clacu-Chr7:26172365 1.60E-222 dispersed
Clacu07g1150 Clacu-Chr7:26172365 Clacu11g0173 Clacu-Chr11:1432098 4.10E-174 dispersed
Clacu07g1150 Clacu-Chr7:26172365 Clacu09g0945 Clacu-Chr9:8817222 1.20E-210 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48054 PF02362 B3 8.00E-22 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1150 K14486 - csv:101213942 1238.02