Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1152 ATGGAGAGTAACCCTCAATCGTTTAGGCAATTCAGCGACCAGCTTCGACTGCAAACTGGGAATCTCGCCAACTTGTCGCTCAACGATTCTATCTGGAGTAATTCGTATGTCTTGAAGAGGCCCGACGAGAGGAGGAATTTCGATGTAAGAAATGGTGGAGAGGTAAATTCGTTGAATAATTTTAAGCCTAAAGTGTCTGATTCTGATGTCAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCCAGTGTTGCTTCTGATCTTAATAATTGGAGCAACACCACCAGTAGTAGTAACTTGAGTTCAACTGGGTATGAAAAGAATGCACTCAATGTGTTTGATAATGGGTGGAGTTTCAAGCCAAAGGGGTCTGATTTTAATGCCTTCAATGATGGATGGAAGCTTAATTCTGCTAATATGGGGGTGGATCCTGTGATTGGAGGAGCTCAAAAGGGTATTAATGGAGGCTTTAACAAAGGGATTCACTCAAAAATTGGGAACTTTAACAGTAACAGTTTTGTAAATCTGAAGAACTACAAGAACACAGGGAAGGTTGAAGAAGAAAATGGTGGAAAGTCTGGGAAGAAGAACAGTAACAAGAAGAACAATGGTGAAAATACAAATGATAATAAGGAAGCTAATAAGAATGCTTTGGACAAGAGGTTCAAGACCCTTCCCCCATCTGAATCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTCTGCAACAATGATACTATGCAAGAGAATCTCAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGAGATTCCGTCAGGGCCATAACTCCTGGGTTGCCTATTTTCCTTTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCTGGCGAATCTCGTTTCCCGGCACAGGTAAGAATTGTGACTAGGAAGATATGCGATCCACTGGAAGAAGACTCTTTCAGACCAATTCTTCACCATTATGATGGCCCCAAGTTCCGCCTTGAACTCAACATTCCAGAGGCACTTTCTCTGCTGGATATATTTGGAGAACAATCCTCTTGA 1113 41.78 MESNPQSFRQFSDQLRLQTGNLANLSLNDSIWSNSYVLKRPDERRNFDVRNGGEVNSLNNFKPKVSDSDVNRFNDGWNSFKPSVASDLNNWSNTTSSSNLSSTGYEKNALNVFDNGWSFKPKGSDFNAFNDGWKLNSANMGVDPVIGGAQKGINGGFNKGIHSKIGNFNSNSFVNLKNYKNTGKVEEENGGKSGKKNSNKKNNGENTNDNKEANKNALDKRFKTLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKTPGESRFPAQVRIVTRKICDPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFGEQSS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26208108 26209657 + ClG42_07g0115200.10 Clacu07g1152 253750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1152 370 MobiDBLite consensus disorder prediction 184 230 - -
Clacu07g1152 370 PANTHER - 192 368 IPR044832 GO:0034976(InterPro)
Clacu07g1152 370 Coils Coil 201 221 - -
Clacu07g1152 370 ProSiteProfiles DCD domain profile. 235 367 IPR013989 -
Clacu07g1152 370 MobiDBLite consensus disorder prediction 184 199 - -
Clacu07g1152 370 Pfam Development and cell death domain 238 365 IPR013989 -
Clacu07g1152 370 MobiDBLite consensus disorder prediction 205 219 - -
Clacu07g1152 370 SMART dcd 235 367 IPR013989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1152 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0173 Clacu-Chr1:1724899 Clacu07g1152 Clacu-Chr7:26208108 5.10E-98 dispersed
Clacu05g1510 Clacu-Chr5:18500488 Clacu07g1152 Clacu-Chr7:26208108 2.00E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g160 . . . . . . Bma07g01687 . . Cmo16g00586 . . . . . Cpe14g00450 . . . . . . . . Cla07g01087 Cam07g1411 Cec07g1250 Cco07g1227 Clacu07g1152 Cmu07g1131 Cre07g1511 . . . . . . . Cme07g01537 . Blo19g00370 . Bda09g00012 Bpe08g01522 . . . . . . . Cma16g00534 . . . . . . . . . . . . . . . . . . . Csa04g00676 Chy07g01134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007398 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36