Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1160 ATGGTTATGGCCAAAGCTATTCTTGTCACCGGCGGCGCTGGCTACATTGGAAGCCACACTGTTCTTCAGCTCCTTCTCGGCGGTTACCGGACCGTCGTCGTCGATAATTTGGACAATTCCTCTGAAATTGCTGTTCGTCGAGTTAAGGAGCTCGCCGGCGATCTTGGCAAAAACCTTTCGTTTCACAAGCTGGACCTCAGGGACAAACGGGCTTTGGAGAAGGTGTTTGCTTCAACACCATTTGACGCTGTTATTCACTTTGCTGGGCTGAAAGCAGTTGGTGAAAGTGTACAGAAACCATTGCTTTACTATGACAACAACTTAGTTGGAACAATTACTTTATTGGAAGTCATGGCGGCCCATGGGTGTAAAAAGCTTGTCTTCTCATCTTCAGCCACCGTTTATGGTTGGCCGAAGGAGGTACCATGTACAGAAGAATTCCCCCTTTCTGCAGCAAACCCATATGGACGAACCAAGCTTTTCATAGAAGAAATCTGCCGTGACATATACAGTTCAGACTCTGAATGGAAAATCATATTGCTAAGATATTTCAATCCAGTGGGCGCCCACCCCAGTGGCTATATTGGTGAGGATCCCCGTGGAATCCCAAACAACCTCATGCCCTTTGTACAACAAGTTGCTGTCGGCAGGCGTCCTGCCTTGACAGTCTTTGGAACCGACTATTCAACAAAAGATGGAACCGGAGTACGTGATTATATTCATGTTGTTGATTTAGCTGATGGACACATTGCTGCATTGCGCAAGTTAGATGTGGCTGGTATAGGTTGTGAAGTTTACAACTTGGGAACTGGAAAGGGTACATCGGTTTTGGAGATGGTTGCAGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTGATGTCTGAACGCCGACCTGGTGATGCTGAAATTGTCTACGCATCGACTCACAAAGCAGAAAAGGAGTTGAACTGGAAGTATAGCAAAATATGGAATCGACGAGATGTGCAGGGATCAGTGGAACTGGGCCAGCAAGAATCCTTATGGCTACGAATCTCCAAACTCCAACTAATGGACTTGGGAGTACCAGTTGAAAACAAAACTGAAACATGTTGGTTGCTTTTGTTTAGCTCTAAGTCTATTGATTTGGTTCACTTTCTGAGGGCCTGTACGGCGCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTCTGGGACTCCTTGCCGGCTATCGCCGTCGTCGGCGACCTCTTGTCTTGCAACTTCATAAAAGTGACGAAGGAAGCAGAGATTGCTGTCAGGAAGGAAATTCAAGATGAGACTGATCGAGAGACTGGTCGTTCTAAACAAATTTCTAGTGTCCCAATTCATCTCAGTATATATTCTCCCAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTTACAAAAGTAGCCGTCGAGGGGCAGCCAGAGAGTATTGTTCAAGAAATTGAAATGATGGTTCGCTCCTATATTGAAAAGCCTAATTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACATCTGATGCGATTAAAATCTCTCGTGAAGTTGATCCTACTGGGGAGAGAACTCTTGGTGTGTTGACGAAGATTGATCTCATGGATAAGGGAACAGATGCTGTTGATATATTGGAAGGCAAAGCTTACAGGCTGAAGTTTCCTTGGGTTGGTGTCGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCAGCTAGGCGTAGGGAGCGTGAATATTTTGCTAGCACTCCAGAATACAAGCACCTTGCCCATAGGATGGGCTCTGAGCATCTAGCAAAGGTCCTTTCAAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCTGGCATTCAAAACCTTATTAACAAGACCATTTCAGAACTTGAATCCGAACTAAGCCGTCTTGGAAGGCCTGTTGCAAATGATGCTGGAGGAAAACTATACATGATTATGGAGATTTGTCGTGCTTTTGATCAGAATTTTAAAGAACACCTGGATGGCGTGCGTCCTGGTGGAGATAAAATTTACAATGTCTTTGATGACCAACTTCCTGCTGCGCTTAAGAGGTTACAGTTTGACAGGCAGCTATCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATTGCTCCTGAACAAGGATATCGTCGTCTTATTGAATCTACTTTAGTTACTATTAGAGGCCCAGCTGAGGCATGTGTTGATGCGGTTCATGCCATATTGAAGGATCTGGTTCACAAAGCTATGGGTGAAACTCTAGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGGTAGGAAACGCCGCTATTGAATCCCTGGAACGAATGAGGGAGCAAAGCAAGAAAGCATCACTTCAGCTTGTAGATATGGAGTGCAGTTACCTGACTGTTGATTTCTTCCGGAAGCTACCTCAAGATATTGAAAAGGGAGGCAACCCTACACATTCGATTTTTGACCGATACAATGACTCATATCTAAGGCGTGTCGGAACGACGGTGCTATCTTATGTCCATATGGTTTGTGCAAGCCTACGAAACTCGATTCCAAAGTCCATTGTTTATTGTCAAGTACGAGAGGCCAAAAGAAGCCTCCTCGACCACTTTTTCACCGAGTTGGGAAAACTTGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATAATGGAGCGGCGTTCTGCCCTAGCAAAGAGGCTCGAGTTATACAGAAGTGCACAAGCAGAAATCGACACGGTTGCTTGGTCGAATTTCCGACGCTATATAAAAAGAAGTGATTTTTGCCATCTTTCTTCGACGCCCTTCGGGGATATGGATACCGATATCTAG 2883 44.47 MVMAKAILVTGGAGYIGSHTVLQLLLGGYRTVVVDNLDNSSEIAVRRVKELAGDLGKNLSFHKLDLRDKRALEKVFASTPFDAVIHFAGLKAVGESVQKPLLYYDNNLVGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTKDGTGVRDYIHVVDLADGHIAALRKLDVAGIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSERRPGDAEIVYASTHKAEKELNWKYSKIWNRRDVQGSVELGQQESLWLRISKLQLMDLGVPVENKTETCWLLLFSSKSIDLVHFLRACTALGDHGEASALPTLWDSLPAIAVVGDLLSCNFIKVTKEAEIAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIEMMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFASTPEYKHLAHRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAEACVDAVHAILKDLVHKAMGETLELKQYPGLRVEVGNAAIESLERMREQSKKASLQLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDTVAWSNFRRYIKRSDFCHLSSTPFGDMDTDI 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26254732 26267992 - ClG42_07g0116000.10 Clacu07g1160 253758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1160 960 Gene3D Dynamin, middle domain 656 911 - -
Clacu07g1160 960 ProSiteProfiles GED domain profile. 843 936 IPR020850 -
Clacu07g1160 960 SMART dynamin_3 359 576 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu07g1160 960 PANTHER DYNAMIN 427 930 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0005886(PANTHER)|GO:0006898(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Clacu07g1160 960 SMART GED_2 838 931 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu07g1160 960 Coils Coil 790 810 - -
Clacu07g1160 960 Gene3D - 7 276 - -
Clacu07g1160 960 Pfam GDP-mannose 4,6 dehydratase 8 321 IPR016040 -
Clacu07g1160 960 CDD UDP_G4E_1_SDR_e 6 320 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Clacu07g1160 960 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 426 625 IPR030381 GO:0005525(InterPro)
Clacu07g1160 960 Pfam Dynamin family 427 538 IPR045063 -
Clacu07g1160 960 FunFam Dynamin-related protein 5A 657 911 - -
Clacu07g1160 960 Gene3D - 412 634 IPR027417 -
Clacu07g1160 960 Pfam Dynamin GTPase effector domain 839 931 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu07g1160 960 Gene3D - 195 322 - -
Clacu07g1160 960 NCBIfam UDP-glucose 4-epimerase GalE 6 321 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Clacu07g1160 960 CDD DLP_1 427 625 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu07g1160 960 Pfam Dynamin central region 546 814 IPR000375 -
Clacu07g1160 960 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 322 IPR036291 -
Clacu07g1160 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 634 IPR027417 -
Clacu07g1160 960 FunFam UDP-glucose 4-epimerase 7 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1160 K27686 - - csv:101209311 1026.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0167 Clacu-Chr1:1673499 Clacu07g1160 Clacu-Chr7:26254732 4.40E-169 dispersed
Clacu01g0303 Clacu-Chr1:2995367 Clacu07g1160 Clacu-Chr7:26254732 5.70E-124 dispersed
Clacu01g2625 Clacu-Chr1:36412695 Clacu07g1160 Clacu-Chr7:26254732 4.60E-72 dispersed
Clacu06g0126 Clacu-Chr6:1357302 Clacu07g1160 Clacu-Chr7:26254732 1.10E-253 dispersed
Clacu07g1160 Clacu-Chr7:26254732 Clacu09g1283 Clacu-Chr9:13607223 1.10E-212 dispersed
Clacu07g1160 Clacu-Chr7:26254732 Clacu10g0969 Clacu-Chr10:20989931 4.20E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g145 Blo02g01152 Blo03g00251 Bda06g00151 Bda08g00463 Bpe05g00696 Bpe07g00067 . . . . Cma02g00928 . Car02g00677 . . Cpe14g00457 . . . . . . . . Cla07g01096 Cam07g1402 Cec07g1259 Cco07g1236 Clacu07g1160 Cmu07g1139 Cre07g1520 . . Cone6ag0856 Cone9ag0858 . . . . . . . . . . Bma05g00878 Bma12g00612 . Cmo02g00937 . . . . . . . . . . . . . . . . . . . . . . Csa04g00666 Chy07g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018168 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5