Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1187 ATGGCTTCCAAAAATAATGATTCATTACACAGCTTCTGCACCAGCAGTCAGGATCCACTCAACTGGGGTGTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGACACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCTATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGTGCAGAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTCATTCTGGGTTCTTCGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAACGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCCGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATCGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATACTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATGGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAAGTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2130 45.02 MASKNNDSLHSFCTSSQDPLNWGVAADSMKGSHLDEVKRMVEEYRTPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMCRGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDGRSYPLYRFVREELGTSLLSGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26706119 26708248 - ClG42_07g0118700.10 Clacu07g1187 253785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1187 709 FunFam Phenylalanine ammonia-lyase 9 255 - -
Clacu07g1187 709 SUPERFAMILY L-aspartase-like 18 709 IPR008948 GO:0003824(InterPro)
Clacu07g1187 709 CDD PAL-HAL 54 519 IPR001106 -
Clacu07g1187 709 Gene3D Fumarase/aspartase (Central domain) 256 704 - -
Clacu07g1187 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 191 207 IPR022313 GO:0016841(InterPro)
Clacu07g1187 709 FunFam Phenylalanine ammonia-lyase 256 560 - -
Clacu07g1187 709 NCBIfam phenylalanine ammonia-lyase 18 699 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu07g1187 709 Gene3D - 10 255 IPR024083 -
Clacu07g1187 709 Gene3D - 522 643 IPR023144 -
Clacu07g1187 709 PANTHER HISTIDINE AMMONIA-LYASE 15 709 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu07g1187 709 FunFam Phenylalanine ammonia-lyase 522 643 - -
Clacu07g1187 709 Pfam Aromatic amino acid lyase 56 534 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0963 Clacu-Chr4:23840285 Clacu07g1187 Clacu-Chr7:26706119 0.00E+00 dispersed
Clacu04g0964 Clacu-Chr4:23845158 Clacu07g1187 Clacu-Chr7:26706119 0.00E+00 dispersed
Clacu07g1187 Clacu-Chr7:26706119 Clacu08g0908 Clacu-Chr8:19205397 0.00E+00 dispersed
Clacu07g1187 Clacu-Chr7:26706119 Clacu07g1188 Clacu-Chr7:26709956 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1187 K10775 - csv:116401606 1323.53