Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1210 ATGGACACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGGACTCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGATAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAGAGCTGCATCTCTTTCAATGTTGATGATAATTGGGGCAGTGAAGAAGGAGGCTTATCTAAACTAGTCTCTTCTTGTTCATTGCCGTACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATAGGTACCTCGATACTCATCTTTGCCGGAACCGCCACGGCCATCGTGAACCAAAAGACGAAAGGAACCGAAACACTGATTGGGCTGGCGGCCTCCACCGGCCTTGCGGTGATGATTGTGATCTTGTCGACGGGTCACATCTCTGGAGCCCATCTGAATCCGGCCATCACCATTGCTTTTGCTGCGTTGAAGCAGTTTCCATGGAAGCATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCTTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGAAATGCCCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCTGTCGCTACTGACACTCGGGCTGTGGGAGAATTGGCGGGAATCGCGGTAGGAGCAACCGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCTGCAAACAACTTTAGAGCCATTTGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATGGCAATTCACGCTTGCCTTCTACTGCAGGAAGCTTTCGAGGATGA 915 49.62 MDTEEAPSTPVTPGTPGAPLFGRVKDNQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKLVSSCSLPYPPVSLARKVGAEFIGTSILIFAGTATAIVNQKTKGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGNAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDKDGNSRLPSTAGSFRG 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26980733 26984829 + ClG42_07g0121000.10 Clacu07g1210 253808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1210 304 MobiDBLite consensus disorder prediction 1 33 - -
Clacu07g1210 304 Gene3D Glycerol uptake facilitator protein. 69 293 IPR023271 -
Clacu07g1210 304 FunFam Aquaporin NIP2-1 65 295 - -
Clacu07g1210 304 SUPERFAMILY Aquaporin-like 72 290 IPR023271 -
Clacu07g1210 304 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Clacu07g1210 304 PANTHER AQUAPORIN NIP2-1 68 289 IPR034294 -
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1210 304 Pfam Major intrinsic protein 73 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0112 Clacu-Chr1:1030165 Clacu07g1210 Clacu-Chr7:26980733 1.10E-88 dispersed
Clacu01g0113 Clacu-Chr1:1038271 Clacu07g1210 Clacu-Chr7:26980733 9.50E-81 dispersed
Clacu07g1210 Clacu-Chr7:26980733 Clacu10g1496 Clacu-Chr10:28201884 3.20E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1210 K09874 - csv:101207376 574.704