Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1213 ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCTAATTCTCAACTGGGTTTGGATCTGAGCCTTTCTAATAAAGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAACAACAGAACCTACAGATACAGAAACAGAGCCCAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCCCACAAGCGAGAGAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTCGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTCAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTTCTCTTCATGTTTCTGCAATTGGGTCATCTGGAATTTATGGTCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTTAGAGGCATTTCGTCGAACACCGGAGCTGCAAGGTTTCAGGGTGTGAAGAAATTCTCTCCGGCGGCAGACACGGAGGCGCCACCGCCTCTCGGAGGGTTCTGGTGGGATGGCGGCGGTGGTGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 801 47.94 MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNKDSDHGSNPELNLIDCFDVNLTTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFQGVKKFSPAADTEAPPPLGGFWWDGGGGGGFSHLKMKPKQDELLKLDLSLKL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27012881 27013681 + ClG42_07g0121300.10 Clacu07g1213 253811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1213 266 FunFam Zinc finger protein 2 67 131 - -
Clacu07g1213 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 266 IPR044246 GO:0009788(InterPro)
Clacu07g1213 266 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Clacu07g1213 266 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Clacu07g1213 266 MobiDBLite consensus disorder prediction 8 22 - -
Clacu07g1213 266 Gene3D Classic Zinc Finger 66 130 - -
Clacu07g1213 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Clacu07g1213 266 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1198 Clacu-Chr5:11052674 Clacu07g1213 Clacu-Chr7:27012881 2.00E-20 dispersed
Clacu05g1212 Clacu-Chr5:11265754 Clacu07g1213 Clacu-Chr7:27012881 6.10E-25 dispersed
Clacu05g1797 Clacu-Chr5:27187331 Clacu07g1213 Clacu-Chr7:27012881 3.30E-23 dispersed
Clacu07g1213 Clacu-Chr7:27012881 Clacu08g1522 Clacu-Chr8:25096579 6.20E-30 dispersed
Clacu06g1427 Clacu-Chr6:25140118 Clacu07g1213 Clacu-Chr7:27012881 3.80E-13 transposed
Clacu07g0163 Clacu-Chr7:2098390 Clacu07g1213 Clacu-Chr7:27012881 9.30E-11 transposed
Clacu10g1622 Clacu-Chr10:29576828 Clacu07g1213 Clacu-Chr7:27012881 5.80E-15 transposed
Clacu11g1492 Clacu-Chr11:26083992 Clacu07g1213 Clacu-Chr7:27012881 1.10E-17 transposed
Clacu07g1213 Clacu-Chr7:27012881 Clacu09g0329 Clacu-Chr9:2798359 1.10E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48059 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1213 - - - 0.0