Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1246 ATGACAGACATCAGCTTGGAGGAGATCAAGAATGAGAACATTGATCTTGAGCGCATTCCCGTCGAGGAAGTGTTTGAACAACTGAAATGCTCCCGAGAAGGTTTATCCTCAGAGGAGGGGCGTCAGAGGCTCCAACTCTTTGGCCCAAATAAGCTTGAAGAGAAAAAAGAAAATAAATTTCTCAAGTTTTTGGGGTTTATGTGGAACCCACTTTCATGGGTTATGGAAGCTGCAGCTATCATGGCCATAGTTCTTGCTAATGGAGGGGGGCAACCACCGGACTGGCAAGATTTTGTGGGGATTACTGCATTGCTTATTATCAATTCCACAATTAGTTTTATAGAGGAAAACAATGCAGGAAATGCTGCAGCTGCACTTATGGCAGGACTTGCACCAAAAACCAAGGTCCTTCGTGATGGAAGATGGTGTGAGGAAGAAGCTGCAATCTTAGTTCCGGGAGATGTTATCAGCATTAAGTTGGGAGATATCATTCCAGCAGATGCTCGTTTGTTGGAAGGCGATCCTCTCAAGATTGATCAGTCAGCACTTACAGGTGAATCTTTGCCAGTTACAAGAAGCTCCGGTGATGAAGTGTTTTCTGGTTCCACTGTCAAGCAAGGTGAGATCGAGGCTGTTGTAATTGCCACTGGTGTCCACACCTTCTTTGGGAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGGCACTTCCAAAAGGTGTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATCGCCGTGGGGATGGTGATAGAGATAGTAGTGATGTACCCGATTCAACATCGCAGATATAGAGATGGGATAAATAATCTCTTGGTGCTTCTCATTGGAGGGATTCCAATTGCCATGCCCACAGTGTTGTCAGTCACAATGGCTATTGGTTCTCATAGGCTATCCCAGCAGGGTGCTATTACAAAGAGAATGACAGCTATTGAAGAGATGGCTGGAATGGATGTTCTTTGCAGTGATAAGACAGGAACTCTAACTCTCAACAAGCTTACAGTTGACAAATCCATGATTGAGGTGTTTGTTAGAGATGTGGACAAAGATAGTTTGATTTTGCTTGGAGCTAGAGCTTCCAGGGTTGAGAATCAAGACGCTATTGATGCTTGCATTGTTGGGATGTTAGGTGATCCTAAGGAGGCCAGAGAAGGCATTAGAGAGGTTCATTTCTTACCCTTTAACCCAGTTGACAAGCGTACAGCCATTACATATATTGACAATGATGGCAACTGGCATCGAGTTAGCAAAGGAGCACCAGAGCAGATTATTGAACTTTGCGACCTCAGAGATGATATCAAGAAGAAAGCTCATTCAATCATTGACAAATTCGCCGATCGTGGTCTTCGTTCTCTTGCTGTTTGCAGACAAGCTGTGCCAGAAAAAACCAAGGAAAGTGCTGGATCACCATGGCAATTTGTTGGTCTCCTACCTCTCTTTGATCCACCAAGGCATGACAGTGCAGAGACAATCAGAAGGGCACTCAATCTTGGTGTCAACGTTAAGATGATCACTGGTGACCAATTGGCAATTGGAAAGGAAACTGGGCGTAGACTTGGAATGGGCACAAACATGTACCCATCTTCCTCACTTCTTGGACAAAGCAAGGACGAGTCAATTGCTTCTTTGCCTGTTGATGAGCTTATTGAAAAGGCTGATGGATTTGCAGGCGTCTTCCCTGAGCACAAATATGAAATTGTGAGGAGGCTTCAAGAGAGGAAGCATATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCAGCTTTGAAGAAGGCAGACATAGGAATTGCCGTTGCTGATGCAACTGATGCTGCAAGAAGCGCTTCAGATATAGTCTTGACAGAGCCAGGATTGAGCGTGATCGTGAGCGCTGTTTTAACAAGCAGAGCCATTTTCCAAAGAATGAAGAACTACACAATCTATGCAGTCTCAATAACCATCCGTATTGTACTTGGTTTTATGCTTATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTTTGATCATAGCCATTCTCAATGATGGCACCATCATGACCATCTCTAAAGATAGAGTAAAACCCTCTCCTCTTCCTGATTCATGGAAGCTCCGTGAGATCTTTGCAACTGGCATTGTCTTGGGCTCATACTTAGCAGTTATGACTGTTGTTTTCTTCTGGATTGCTCACACTACTGATTTCTTCTCGGACAAATTTGGTGTACATTCTATCAGAGGAAATGGTGGTGAGCTCACAGCAGCTGTGTATCTTCAAGTCAGCACAGTGAGTCAAGCACTCATCTTTGTGACAAGATCTCGAAGCTGGTCCTTTATTGAGCGCCCTGGTCTGCTCCTGGTGTTTGCTTTCTTCCTAGCACAGCTGGTGGCTACCCTAATTGCTGTATATGCCAACTGGGCCTTTGCTGACATGAAAGGAATTGGCTGGGGATGGGCAGGAGTGATCTGGATCTACAGCATAATCTTCTACATTCCTCTTGACATTCTCAAGTTCGCGACTCGATATGCATTGAGTGGCAAGGCTTGGAATAATATGATCCAAAACAAGACTGCTTTCACATCAAAGAAGGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGTACTCTTCATGGCCTACAGCCTCCTGAAGCATCTGAACTCTTTCATGACAAAACCAATTACAGGGAGCTATCCGAAATCGCTGAGCAAGCCAAGAAGCGTGCTGAGGTTGCAAGGTTGAGGGAGCTTCATACATTGAAGGGGCATGTTGAATCGGTGGTGAAACTGAAGGGATTGGATATTGAAACTATCCAACAACACTACACTGTTTGA 2856 44.75 MTDISLEEIKNENIDLERIPVEEVFEQLKCSREGLSSEEGRQRLQLFGPNKLEEKKENKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEEEAAILVPGDVISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTRSSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIVVMYPIQHRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDSLILLGARASRVENQDAIDACIVGMLGDPKEAREGIREVHFLPFNPVDKRTAITYIDNDGNWHRVSKGAPEQIIELCDLRDDIKKKAHSIIDKFADRGLRSLAVCRQAVPEKTKESAGSPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGIVLGSYLAVMTVVFFWIAHTTDFFSDKFGVHSIRGNGGELTAAVYLQVSTVSQALIFVTRSRSWSFIERPGLLLVFAFFLAQLVATLIAVYANWAFADMKGIGWGWAGVIWIYSIIFYIPLDILKFATRYALSGKAWNNMIQNKTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPEASELFHDKTNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 951
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 27283934 27287870 - ClG42_07g0124600.10 Clacu07g1246 253844
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1246 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Clacu07g1246 951 Gene3D - 132 216 - -
Clacu07g1246 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Clacu07g1246 951 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu07g1246 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Clacu07g1246 951 SFLD C1.7: P-type atpase like 311 640 - -
Clacu07g1246 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Clacu07g1246 951 Pfam E1-E2 ATPase 131 308 - -
Clacu07g1246 951 Coils Coil 902 922 - -
Clacu07g1246 951 FunFam Plasma membrane ATPase 341 488 - -
Clacu07g1246 951 Gene3D - 326 625 IPR023214 -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Clacu07g1246 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Clacu07g1246 951 FunFam Plasma membrane ATPase 481 636 - -
Clacu07g1246 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 NCBIfam HAD-IC family P-type ATPase 563 676 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 NCBIfam HAD-IC family P-type ATPase 101 348 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu07g1246 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu07g1246 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Clacu07g1246 951 Gene3D - 94 815 - -
Clacu07g1246 951 FunFam ATPase 4 plasma membrane-type 572 815 - -
Clacu07g1246 951 PANTHER CALCIUM-TRANSPORTING ATPASE 17 874 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Clacu07g1246 951 Gene3D - 900 951 - -
Clacu07g1246 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Clacu07g1246 951 FunFam Plasma membrane ATPase 132 216 - -
Clacu07g1246 951 SFLD p-type atpase 311 640 IPR044492 -
Clacu07g1246 951 Gene3D - 341 488 IPR023299 GO:0000166(InterPro)
Clacu07g1246 951 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1298 Clacu-Chr6:23907773 Clacu07g1246 Clacu-Chr7:27283934 0.00E+00 dispersed
Clacu07g1246 Clacu-Chr7:27283934 Clacu08g1422 Clacu-Chr8:24284781 0.00E+00 dispersed
Clacu07g1246 Clacu-Chr7:27283934 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1246 K01535 - csv:101212751 1772.67