Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1247 ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAGTGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG 531 52.17 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHSAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27294846 27296199 - ClG42_07g0124700.10 Clacu07g1247 253845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1247 176 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677(InterPro)
Clacu07g1247 176 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 106 IPR050913 -
Clacu07g1247 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1247 176 FunFam Ethylene-responsive transcription factor 2 6 64 - -
Clacu07g1247 176 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1247 Clacu-Chr7:27294846 Clacu08g1518 Clacu-Chr8:25064303 2.40E-38 dispersed
Clacu07g1247 Clacu-Chr7:27294846 Clacu08g1517 Clacu-Chr8:25057042 3.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48062 PF00847 AP2 4.00E-11 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1247 - - - 0.0