Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1249 ATGGCCCTTCGCCCTTTCTTCTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAGGAATTACACTCGGCCACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATAGCAGTTAAAAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTTTCTGTGGAAGTTGAAATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGCTTGATTGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCAGAATGCCATCTTGATTGGAAACGTCGTATGAAAATCGCTATTGGGTCTGCCGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTGCTGGATCCAGATTTCCAAGCTCGAGTAGCTGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTTGCTCCTGAATATGCTATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGTTTTGGCATTCTCCTGCTTGAGCTTGCTACCGGCAAGAAGCCTCTTGAGAAATTGAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAAAATTGACGAACTTGCAGACCCGAAGCTAAATGGAGACTATAACGCAGACGAACTAAAGAGAGTCGTCCTTGTTGCGCTCTGTTGTTCCCATTCACGACCTGAGAAACGACCGACCATGCTCGAGGTGGTTGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTGGCCAAATTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGGATTCAAAAGAGAAGGAGAAAGAGAATTCATCACAAAACCCCACATGA 1110 44.14 MALRPFFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIIDWALPIVVEKKIDELADPKLNGDYNADELKRVVLVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEIQAGEDSSDFISEEKDSKEKEKENSSQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27309843 27312835 - ClG42_07g0124900.10 Clacu07g1249 253847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1249 369 CDD STKc_IRAK 46 313 - -
Clacu07g1249 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Clacu07g1249 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Clacu07g1249 369 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Clacu07g1249 369 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Clacu07g1249 369 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1249 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Clacu07g1249 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1249 369 PANTHER OS01G0750732 PROTEIN 22 349 IPR050885 -
Clacu07g1249 369 Coils Coil 305 325 - -
Clacu07g1249 369 MobiDBLite consensus disorder prediction 347 369 - -
Clacu07g1249 369 MobiDBLite consensus disorder prediction 335 369 - -
Clacu07g1249 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Clacu07g1249 369 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1249 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1402 Clacu-Chr6:24923521 Clacu07g1249 Clacu-Chr7:27309843 1.20E-114 dispersed
Clacu07g1249 Clacu-Chr7:27309843 Clacu11g0384 Clacu-Chr11:3501975 1.70E-78 dispersed
Clacu10g2199 Clacu-Chr10:35070479 Clacu07g1249 Clacu-Chr7:27309843 8.70E-65 dispersed
Clacu10g2200 Clacu-Chr10:35075347 Clacu07g1249 Clacu-Chr7:27309843 2.10E-66 dispersed
Clacu03g0413 Clacu-Chr3:4544910 Clacu07g1249 Clacu-Chr7:27309843 7.10E-57 transposed
Clacu05g0906 Clacu-Chr5:8011002 Clacu07g1249 Clacu-Chr7:27309843 3.00E-115 transposed
Clacu09g0656 Clacu-Chr9:5684249 Clacu07g1249 Clacu-Chr7:27309843 6.80E-72 transposed
Clacu06g1244 Clacu-Chr6:23300765 Clacu07g1249 Clacu-Chr7:27309843 1.20E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73704 PF00069 Pkinase 7.10E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1249 - - - 0.0