Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1268 ATGGCGCATATTTTGCTTCATGGTACCCTTCATGTCACCATTTATGAAGTGGATAAGCTTCATTCTGGTGGTCGCAATTTCTTGAAACAGTTGGTTGAAAACGTAGAGGAGGCAGTTGGGTTTGGTCGAGGAGTAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAGAAAGAACATTCAAACCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATTGGCAGAGCATATTTGCCTGTTCGAGAGATCATACATGGTGAAGAAGTTGACAAATGGGTTCCAATCTTAGATGAACGTAAGAATCCCATTCGTGGGGAGCCCAAAATTCATGTCAAATTACAGTATTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCTCAAGTTTCCTGGCGTTCCCTACACTTATTTCTCCCAAAGACAAGGTTGTAAGGTAACTTTGTATCAAGATGCTCATGTTCCAGACAACTTTATCCCGAAAATCCCTCTTGCTGGAGGCAAGTTTTATGAGCCACATCGATGCTGGGAAGATATTTTTGATGCAATTACTAATGCTAAACACTTGATTTATATTTCTGGATGGTCTGTTTACACCGAGATTTCTTTGGTGAGAGATAGAAGAAGGCCAAAGCCTGGTGGAGATATAATGCTCGGCGAATTGCTTAAGAAAAAGGCTGGGGAAGGAGTTAGAGTTCTTTTGCTTATTTGGAATGATACAACTTCTGTTCCTATATTGAAGGAGGAGGGCTTAATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTCCATTGTGTTTTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAAGACATTGCTGTTGGGACAATGTTCACTCACCATCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCTAACAGAAGGAGAATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGGTATGATACCCCATTTCATTCCCTTTTCAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCGAACTTCGCTGGTACTTCCATAAACAAAGGTGGTCCTAGAGAGCCGTGGCACGACATCCATTCCCGCCTCGAAGGACCTGTTGCATGGGATGTTTTGTACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTGTGAAATTGAGGGATTTAGATGAGATCTTCATCACTCCATCACCTGTCACGTTCCCTGATGACATCGACAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTCGGTTTCCCCGACTCGCCTGAAGAAGCAGCAAAAGCAGGGCTGATAAGTGGAAAGGACAACACCATTGACCGAAGTATTCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATAGAAAATCAGTATTTCCTTGGAAGCTCGTTTGACTGGAGAGGTGATGATGTGAAGCCTGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTAGAGAGAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAAGCAATATTGGACTGGCAAAGGAGGACAATGGAAATGATGTATAAGGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTAACTTTCTTTTGTGTTGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAGCCATCAGAATCACCTGAAGAAAATTCTGATTACCTTAGAGCCCAGAAATCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGTGGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGATTCAGAGATAGCAATGGGAGGTTACCAGCCATATCATTTATCAACTAGAGAGCCAGCACGAGGCCAAATCCATGGCTTCCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTGTTCCCAGAAAGTGTTGAATGTGTTAAAAGAGTAAACCAACTTGCTGAAAAATATTGGGATTTATACTCAAGTGAGAGCTTTGAACATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCCATCTCCGCTGACGGTGAAGTTACCGAGCTTCCGGGGTTCGAATACTTCCCCGACACTAAGGCGCGAGTTTTAGGTAACAAATCTAACTACCTCCCTCCAATCCTCACTACTTGA 2424 42.7 MAHILLHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSLKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDIFDAITNAKHLIYISGWSVYTEISLVRDRRRPKPGGDIMLGELLKKKAGEGVRVLLLIWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRDLDEIFITPSPVTFPDDIDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWRGDDVKPEMINALHLIPKELSLKIVSKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPEENSDYLRAQKSRRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTREPARGQIHGFRLALWYEHLGLLHQSFLFPESVECVKRVNQLAEKYWDLYSSESFEHDLPGHLLRYPIAISADGEVTELPGFEYFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27519475 27523405 - ClG42_07g0126800.10 Clacu07g1268 253866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1268 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 Pfam Phospholipase D Active site motif 655 680 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 Gene3D Endonuclease Chain A 200 440 - -
Clacu07g1268 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Clacu07g1268 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Clacu07g1268 807 Pfam C2 domain 10 125 IPR000008 -
Clacu07g1268 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Clacu07g1268 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Clacu07g1268 807 FunFam Phospholipase D 466 699 - -
Clacu07g1268 807 PANTHER PHOSPHOLIPASE D 5 794 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu07g1268 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Clacu07g1268 807 SMART C2_3c 9 123 IPR000008 -
Clacu07g1268 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Clacu07g1268 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 Gene3D Endonuclease Chain A 475 696 - -
Clacu07g1268 807 FunFam Phospholipase D delta 200 443 - -
Clacu07g1268 807 SMART pld_4 325 363 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 SMART pld_4 653 680 IPR001736 GO:0003824(InterPro)
Clacu07g1268 807 Gene3D C2 domain 6 157 IPR035892 -
Clacu07g1268 807 CDD C2_plant_PLD 2 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1268 Clacu-Chr7:27519475 Clacu08g1564 Clacu-Chr8:25477023 3.10E-197 dispersed
Clacu07g1366 Clacu-Chr7:28479150 Clacu07g1268 Clacu-Chr7:27519475 7.60E-174 transposed
Clacu07g1268 Clacu-Chr7:27519475 Clacu08g1488 Clacu-Chr8:24856431 0.00E+00 wgd
Clacu07g1268 Clacu-Chr7:27519475 Clacu09g0279 Clacu-Chr9:2499428 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1268 K01115 - csv:101215246 1599.72