Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1270 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCCGCCGTTCTCATGAGTGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACTGCCCTTGTTCAAAACGATGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCAGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCAAGTAACGGACGAGTCGCCGAAAAAGGGTGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA 564 48.76 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVQNDARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFQVTDESPKKGAEDQVRLSDGAESLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27540030 27540867 + ClG42_07g0127000.10 Clacu07g1270 253868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1270 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Clacu07g1270 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 MobiDBLite consensus disorder prediction 143 167 - -
Clacu07g1270 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Clacu07g1270 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 129 IPR050913 -
Clacu07g1270 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1270 187 Coils Coil 166 186 - -
Clacu07g1270 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1844 Clacu-Chr5:27697131 Clacu07g1270 Clacu-Chr7:27540030 3.30E-49 dispersed
Clacu07g1270 Clacu-Chr7:27540030 Clacu08g1517 Clacu-Chr8:25057042 2.20E-26 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu07g1270 Clacu-Chr7:27540030 7.40E-46 wgd
Clacu06g1202 Clacu-Chr6:22624641 Clacu07g1270 Clacu-Chr7:27540030 1.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48063 PF00847 AP2 4.60E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1270 - - - 0.0