Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1288 ATGGAGAATCTAAGGACTCCATTTAGGGGTATCGTGGGTGATATCAGAGGAAGAGCGGCCTGTTATAAGCAAGATTGGGTTGATGGTCGACTTTCAGGGATTGGAATTTTGGCCCCAACTGCTTACATTTTTTTCGCTTCTGCACTTCCTGTCATTGCTTTTGGTGAGCAATTGAGCCGAGATACAGATGGAAGCTTGAGCACAGTAGAAACATTGGCTTCCACAGCCATTTGTGGCATCCTTCATTCCATTCTTGGTGGGCAACCTCTCCTAGTTGTAGGAGTTGCAGAACCTACAATTATTATGTATACTTATTTGTACAATTTTTGCAAGAAAAGGGAAGATATAGGGGGAGACCTCTTCTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACAGCCCTCTTGCTGTTTCTTCTTGCTATATTCAACGCTTCCAGTCTAATCAACAAATTTACAAGGATTGCAGGGGAACTTTTTGGCATGTTAATCTCCGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCCCAGACCGAGAACACAAGTCTAGAGAAGTATCAATTTCATTGGCTTTACACGAATGGATTACTGGGAATCATCTTTACTTTTGGCCTTCTCTATACCGCCTTGAAGAGCAGAAAGGCAAGATCGTGGTTGTATGGGACAGGCTGGCTAAGGAGTTTCATTGCAGACTATGGAGTTCCTCTGATGGTTGTAGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCGTTTGGAGTTCCTAGAAGACTTCAAAGTCCTTTGGCATGGCAATCTACTTCTCTGCACCATTGGACCGTTGTCAAGGACATGGGGAAGATACCTCCTGCATACATCTTCATGGCCTTTATTCCTGCTGTGATGATTGCAGGACTTTATTTTTTTGATCATAGTGTCGCTTCTCAGATGGCACAACAAAAGGAGTTTAATCTCAAGAACCCTCCTGCTTACCACTATGACATCCTGTTGCTGGGATTTATGACATTGGTTTGTGGGTTAATCGGGCTTCCTCCTTCAAATGGGGTCTTGCCACAGTCCCCCATGCACACCAAGTGTCTTGCAACTCTCAGGAGGCGTTTGATGCGAAGGAAGATGGTAGAAAGTGCAAAGGAAAGCATAAAAAGGAAAGCTAGTGATTCCGAAATCTACGGCCAAATGCAAGCTGTGTTCTTAGAAATGGAGAGCAGCCCAATTACGACATCAGTAGTCAAAGAACTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAGTAAGGATGAAAATGCAAATGTTACATTTGACCCAGAGAAGCATATTGATGCTTATCTTCCTGTTCGAGTGAACGAGCAAAGATTGAGCAATCTACTGCAATCACTTCTGGTGGCAGCATCAGTATTTGCTTTACCAGCAATAAAGAAGATACCAACATCAGTTCTCTGGGGGTACTTCGCGTATATGGCCATTGACAGTCTACCTGGAAACCAATTTTGGGAAAGGATTTTACTTCTCTTTGTAATGCCTAGTCGACGTTACAAGGTCCTAGAAGGTTTTCATGCTTCCTTCGTGGAGTCTGTTCCATTCAAATACATAGCCGCATTCACTCTATTTCAATTTGTATATTTTCTCATTTGTTTTGGAGTGACTTGGATCCCCATAGCTGGAGTCTTGTTTCCTTTGCCTTTCTTCCTTCTCATCGGCATCAGACATCGCATCCTTCCCAAGCTACTCCAACCTCATTATTTGCAGGAGCTCGACGCGGTTGAGTACGAAGAACTAACCGGTACCTCAATTCTCTCGCTTAGCTTGTCTATCAAGGAAAAGAATACCACTCGTATAGTTGATAATGAAGATGAAGTTGAAATATGTGATGCTGAAATACTTGATGAGTTGACAACCCATAGAGGGGAGTTGAAAGTTAGAACTAAAAGCTTCAACGAGGATAGACATAGTCAGATTCATCCTGACCAAGGCATTGGAAATGACAAATACTAA 2019 42.94 MENLRTPFRGIVGDIRGRAACYKQDWVDGRLSGIGILAPTAYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGILHSILGGQPLLVVGVAEPTIIMYTYLYNFCKKREDIGGDLFLAWAGWVCVWTALLLFLLAIFNASSLINKFTRIAGELFGMLISVLFIQEAIKGVVSEFEVPQTENTSLEKYQFHWLYTNGLLGIIFTFGLLYTALKSRKARSWLYGTGWLRSFIADYGVPLMVVVWTALSFSVPSKVPFGVPRRLQSPLAWQSTSLHHWTVVKDMGKIPPAYIFMAFIPAVMIAGLYFFDHSVASQMAQQKEFNLKNPPAYHYDILLLGFMTLVCGLIGLPPSNGVLPQSPMHTKCLATLRRRLMRRKMVESAKESIKRKASDSEIYGQMQAVFLEMESSPITTSVVKELEDLKEAVMKGESKDENANVTFDPEKHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLEGFHASFVESVPFKYIAAFTLFQFVYFLICFGVTWIPIAGVLFPLPFFLLIGIRHRILPKLLQPHYLQELDAVEYEELTGTSILSLSLSIKEKNTTRIVDNEDEVEICDAEILDELTTHRGELKVRTKSFNEDRHSQIHPDQGIGNDKY 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27678743 27682858 - ClG42_07g0128800.10 Clacu07g1288 253886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1288 672 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu07g1288 672 Pfam HCO3- transporter integral membrane domain 195 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu07g1288 672 Pfam HCO3- transporter integral membrane domain 7 190 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu07g1288 672 PANTHER ANION EXCHANGE PROTEIN 4 643 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Clacu07g1288 672 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0519 Clacu-Chr1:5091489 Clacu07g1288 Clacu-Chr7:27678743 2.80E-300 transposed
Clacu01g1368 Clacu-Chr1:25012600 Clacu07g1288 Clacu-Chr7:27678743 1.60E-218 transposed
Clacu04g0292 Clacu-Chr4:9599832 Clacu07g1288 Clacu-Chr7:27678743 3.70E-07 transposed
Clacu10g1172 Clacu-Chr10:24365206 Clacu07g1288 Clacu-Chr7:27678743 6.90E-217 transposed
Clacu07g1288 Clacu-Chr7:27678743 Clacu08g1464 Clacu-Chr8:24652074 2.50E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1288 K24194 - csv:101210964 1232.62