Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1314 ATGGGTGCCGACATGTCCAACAATAATAATACTAATCGCCTTGCTTTTACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGATGGACCATGGGTGTCCTGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAACTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCAAAAGCAGCGGCGTCTCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAATTTTTGGGGTTGAAAAGTCCAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACAGTCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCATTGGTAAAATACAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAATTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCTCAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAGCCCATTGGAGTCATCTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGCGTTCTACTCACCGCGGCGGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATTGAGTACGTTAAAAGCATCATTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2316 45.98 MGADMSNNNNTNRLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGMDHGCPVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPKAAASPSYSSGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATVGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSIGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSAKPTMESIEYVKSIICCTLKNIRTSMCCEDD 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27934672 27943191 - ClG42_07g0131400.10 Clacu07g1314 253912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1314 771 MobiDBLite consensus disorder prediction 39 65 - -
Clacu07g1314 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 768 IPR042160 -
Clacu07g1314 771 SMART START_1 275 506 IPR002913 GO:0008289(InterPro)
Clacu07g1314 771 FunFam Homeobox-leucine zipper protein GLABRA 2 276 505 - -
Clacu07g1314 771 MobiDBLite consensus disorder prediction 39 112 - -
Clacu07g1314 771 Coils Coil 161 188 - -
Clacu07g1314 771 SUPERFAMILY Bet v1-like 529 703 - -
Clacu07g1314 771 ProSiteProfiles START domain profile. 267 509 IPR002913 GO:0008289(InterPro)
Clacu07g1314 771 Coils Coil 213 233 - -
Clacu07g1314 771 Pfam Homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Clacu07g1314 771 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu07g1314 771 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Clacu07g1314 771 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Clacu07g1314 771 MobiDBLite consensus disorder prediction 74 101 - -
Clacu07g1314 771 CDD homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Clacu07g1314 771 Pfam START domain 279 506 IPR002913 GO:0008289(InterPro)
Clacu07g1314 771 SUPERFAMILY Homeodomain-like 92 163 IPR009057 -
Clacu07g1314 771 Gene3D - 278 505 IPR023393 -
Clacu07g1314 771 SUPERFAMILY Bet v1-like 270 507 - -
Clacu07g1314 771 Gene3D - 92 175 - -
Clacu07g1314 771 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Clacu07g1314 771 CDD START_ArGLABRA2_like 271 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0005 Clacu-Chr6:307312 Clacu07g1314 Clacu-Chr7:27934672 5.00E-150 dispersed
Clacu07g1314 Clacu-Chr7:27934672 Clacu09g1169 Clacu-Chr9:11397695 1.20E-121 dispersed
Clacu07g1314 Clacu-Chr7:27934672 Clacu09g0194 Clacu-Chr9:1859602 4.30E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48066 PF01852 START 1.10E-54 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1314 K09338 - csv:101221341 1313.52