Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1328 ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAAGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTGA 612 52.12 MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28088491 28089102 - ClG42_07g0132800.10 Clacu07g1328 253926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1328 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 MobiDBLite consensus disorder prediction 13 32 - -
Clacu07g1328 203 MobiDBLite consensus disorder prediction 1 34 - -
Clacu07g1328 203 Pfam AP2 domain 33 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677(InterPro)
Clacu07g1328 203 SMART rav1_2 33 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 FunFam Ethylene-responsive transcription factor 2 32 93 - -
Clacu07g1328 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 IPR051032 -
Clacu07g1328 203 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1328 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1328 Clacu-Chr7:28088491 Clacu08g1380 Clacu-Chr8:23857461 3.30E-39 dispersed
Clacu07g1328 Clacu-Chr7:28088491 Clacu09g0180 Clacu-Chr9:1744541 3.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48068 PF00847 AP2 9.40E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1328 K09286 - csv:101222354 363.229