Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1332 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCAGTTTGTTCTTCCTTCTATACTTCGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTATCCCACGCCCTTGAATTGTACGGACACAACCCGTTTATGTACCTCGTTTTTGGCCTTCAAGCCTCAGCCAAATCAGACACTTTCTGTGATCCAGAGCATGTTCGACGTATTGCCTGAAGATGTAACTGTGGAAGGCAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGTTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACCATCAAATCCAATCACGGTCATGTATATGATATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTGCCCAACACAACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGACACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGCAATGTCACGGTGGGTGCTTTGTATTATGTTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCGTTGGAGACAGACATTTCTCCTGCTCCTACTCCAGCTCCTTCCTATACTCAGAACAATTTCTCAGATAATGCTCAGAACCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAGTGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCTGATTGGAAGCAAGCCAATGGGGAATCTACCGACAACCAGAGTGCAATTCCAAAAGCTATCGAGAGTAATGTATTTGATGTAGACAAACCTGTGGTTTTTTCATGCGAAGAAATTTTTTCCTCAACTGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTTTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAACCATTTGCATGATCCTCTGAACAAGGGTCATACACCACTATCTTGGATTATGAGACTCCAAATTGCTTTGGACGCTGCGAGGGGTCTTGAATACATTCACGAGCATACTAAAACTCATTATGTTCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACGAAAGTTGTTGGCACATACGGCTATTTGGCTCCTGAATATTTGAGTAACGGTCTTGCGACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAAAAATCCTGAAAGACGTTCACTAGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCTATGAATATGGCAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATTCAATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTATCACAGATCCTACTCTCTTCGATTGAGTGGGAAGCGACTCTAGCTGGAGTCAATGCAGAAAGGCTGCAATATAATGTAGAGTGTGGTAGAGAATATTCAATGTTGAAGAAGGGGATGCTACCGCCGGCGATCAAGATGCCGCTCAGGGGAAAATCTGGGAAGAAGCCATTGACGGACGTTTCCAACCAGAAATACACCCGAACTTCCTCCAAATCTGTCACTAAAGCCAACACAAAGGAAGATGTTAACAGGTCTAAGGTTGAAGAGCAAGATGATTCTCTCGATCGCCTCCTTCTAGTTCAGTCCGATCTCTCCGCCCTCACTCACCAGATCGATGAACTCGTTGTGAAAGCATTTGAACTGAAGGAAATGGACAAACAAGGGAGGAAAGAGATCGAATCTTTCACTCATGTCTTATCTGATATGCTGTCTTCTTTGAAGCCCTGGGTTCCCAGGTTGCAGAAGGTGTTCTCTCATCCATCAAAAGATTCTGATGATGGTCTAGGACAATCGTTGGCTAGTGAAAGCAATACGGCTAGTGAAAGCAATACTTTGGTTAATGATATGGAAAACAACGTTGTTGATAGCCCAGACCATGCTGAAGCTCAAGATCTGATCTCTCCTTCACCCCTAGTATCATGGCGTGCTGGATGCAATATAGAGAGAGGAAGACAATTGTTTCTACTCACACCTCTTCCTATTTCTAAATCACTCTCATCGAAACATGTGGCATATTCTAAATCTGTTCTTACCGGAATGAATTCGGGTATACTCAAGGGTACACAGCCATGTTTTATTTCTTGTGGAGATTTAAATGAGAATACGCTTGAAGGCAATGGAATTGAGCCTGGTGTTGGGAAGCCTTCTGGGTCTGATTTAACGACACTGGGGGAGAATCTGCTTGAATGCAATGGGATTGAGGTTAGTGTTGGTAAGCCATCTGGGTCTGATTTGACCAAACTGGGGGATAATTTGCTAGAAGGTAATGCACTTGAGCCTAGTGGTGCTGAGCCTTCTGGGTCTGATTGGACGACTCATCAGCGTGGATTTGCTTCCCCCCCATTGTTATCAAAGAAGAACTGCTCTATGTTAATTATGACACCATGCTTTAAAATGTCACCGCCAAAATCTTGTGTGCTGCTTGAACCCATTTCAGAGTCATCACAAAAAGATAAAAAAAGGCTATACAAGGCCACGCCTTTTCCTGTTGGAGTTAATGATTACTCGTCTGGCAGTGACGCTTCTGATGAGTTGCCTTTAAAGTATCCAGAACTCTTAGGAATTCAACAGGCTCACAAATCAGGAATTAGAAAGAAGGTTGAAGCCTCACCAGACTGGTTTCTGTCACCTCCAAAAACATGTGTTTTATTGGACCCGTCTGATTCTCATTCGGTGGAAAGTGGTACTTGTGATGGATGTCACGAAGCTAATAAATCTTTCAGCCACCAAGATCCAGTTGGGGTGAGCTTGCCGCAAATAGATAACACTCCCATGTTGAAGGAATGTGAAAGTGTATTCCGGGTTGGCAAACGTGCTGGGGAGGAGACTCTTAAGAAAGAACTGTGGGTGAAATTTGAAGCAGCCTCAGGCAATCCATTTCGTTGTGATCAAGCTCTTGAGAAGACATCAAAGAAAGGCTTCCTGGACTTGTTGGATGAGTCAACTTCAGCAACCCAAAGTCCATCCTCTAATCATCTGGGCAATGAAGGCGTAGTACAACATGGCAATGATGTGGACCAAGTGTCCGAGTAA 3678 43.26 MFWSMNPVRIRSLFFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGHVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYVPLNSVPGDPYPLETDISPAPTPAPSYTQNNFSDNAQNPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQANGESTDNQSAIPKAIESNVFDVDKPVVFSCEEIFSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKNHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGVNAERLQYNVECGREYSMLKKGMLPPAIKMPLRGKSGKKPLTDVSNQKYTRTSSKSVTKANTKEDVNRSKVEEQDDSLDRLLLVQSDLSALTHQIDELVVKAFELKEMDKQGRKEIESFTHVLSDMLSSLKPWVPRLQKVFSHPSKDSDDGLGQSLASESNTASESNTLVNDMENNVVDSPDHAEAQDLISPSPLVSWRAGCNIERGRQLFLLTPLPISKSLSSKHVAYSKSVLTGMNSGILKGTQPCFISCGDLNENTLEGNGIEPGVGKPSGSDLTTLGENLLECNGIEVSVGKPSGSDLTKLGDNLLEGNALEPSGAEPSGSDWTTHQRGFASPPLLSKKNCSMLIMTPCFKMSPPKSCVLLEPISESSQKDKKRLYKATPFPVGVNDYSSGSDASDELPLKYPELLGIQQAHKSGIRKKVEASPDWFLSPPKTCVLLDPSDSHSVESGTCDGCHEANKSFSHQDPVGVSLPQIDNTPMLKECESVFRVGKRAGEETLKKELWVKFEAASGNPFRCDQALEKTSKKGFLDLLDESTSATQSPSSNHLGNEGVVQHGNDVDQVSE 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28148286 28157520 - ClG42_07g0133200.10 Clacu07g1332 253930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 800 827 - -
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 688 730 - -
Clacu07g1332 1225 SUPERFAMILY LysM domain 157 202 IPR036779 -
Clacu07g1332 1225 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Clacu07g1332 1225 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 656 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Clacu07g1332 1225 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1332 1225 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Clacu07g1332 1225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 806 827 - -
Clacu07g1332 1225 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 698 718 - -
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 1194 1225 - -
Clacu07g1332 1225 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1332 1225 SMART LysM_2 158 202 IPR018392 -
Clacu07g1332 1225 Pfam LysM domain 162 196 IPR018392 -
Clacu07g1332 1225 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1332 1225 FunFam Kinase family protein 335 431 - -
Clacu07g1332 1225 Gene3D LysM domain 156 202 IPR036779 -
Clacu07g1332 1225 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Clacu07g1332 1225 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Clacu07g1332 1225 MobiDBLite consensus disorder prediction 964 989 - -
Clacu07g1332 1225 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2301 Clacu-Chr5:31403084 Clacu07g1332 Clacu-Chr7:28148286 2.20E-37 dispersed
Clacu05g2760 Clacu-Chr5:35029126 Clacu07g1332 Clacu-Chr7:28148286 4.90E-94 dispersed
Clacu07g1332 Clacu-Chr7:28148286 Clacu05g2516 Clacu-Chr5:33270190 2.00E-54 dispersed
Clacu07g1332 Clacu-Chr7:28148286 Clacu07g0143 Clacu-Chr7:1810688 6.80E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73706 PF07714 PK_Tyr_Ser-Thr 4.70E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1332 - - - 0.0