Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1338 ATGCACAGAATCGCCGGTTCACGACTCAGGTCGCTCAAGAACCATGCGGCCAATTTGGGGGCCTCTAGATTTGCAACATCCAGTGCAGTTGCTGCAAGACCAACGTCTGGAGGGTTTTTTAGCTGGCTCACTGGAGAACGTTCAAGCTCTCTTCCCCCATTGGAAACACCACTATCTGGTATTACCCTCCCACCACCATTGCCTGATCACGTTGAACCAAGCAAGACCAAGATTACAACTCTTCCTAATGGTGTCAGAATAGCTTCAGAAACTTCTTCGAACCCTGCAGCCTCTATTGGGATATATCTTGATTGTGGTTCCATATATGAGACCCCAGTGTCTTCCGGAGCATCACATTTGCTGGAAAGGTTGGCCTTCAAGAGCACAACAAATCGAAGCCATTTGCGCATTGTTAGGGAAGTAGAAGCTATTGGTGGCAACACAGGTGCCTCTGCCTCCCGGGAGCAAATGGGATACACTTTTGATGCTTTAAAGACATATGTTCCAGAAATGGTGGAATTGCTAGTAGACTGTGTCAGGAATCCTGTATTTTTGGATTGGGAAATCAATGAAGAGCTGCAAAAGCTAAAAGCAGAAATTGGAGAACTTGCAAATAACCCCCAGGGCTTACTTCTCGAGGCAATTCATTCTGCTGGGTATTCTGGGGCACTTGCAAATCCTCTTGTGGCTCCAGAGTTTGCATTAAGCAGATTGGATGGCACCATCTTGGAGGAATTTATTGCTGAGAACTATACTGCTCCTAGAATGGTGCTTGCAGCATCAGGGGTTGAACATGAGGAGCTTTTATCCATTGCAGAACCTCTTCTATCTGACCTACCCAAAGTACCCATTGTGAGAGTGCCGGAATCTGCATATGTTGGAGGGGATTATCGTCGTCAAGCTGACTGTGGGAGCACACATGTTGCCCTGGCTTTTGAGGTTCCTGGTGGCTGGCACAAGGAGAAAGATGCCATTGTTTTGACGGTTCTTCAGATGCTTATGGGAGGTGGTGGTTCATTTTCTGCTGGGGGCCCTGGTAAAGGCATGCACTCGAGGTTATATCTCCGTGTTTTGAATGAGTACCAGCAGATTCAATCTTTTTCTGCATTTAACAGCATCTTCAATAACACGGGACTGTTTGGAATTTATGCTAGCACTGGTTCTGACTTTGTGGCCCAAGCAGTTGATATTGCTGCATCAGAACTAATCTCAATTGCAACTCCTGGACAAGTTTCCCAGGTGCAGCTTAACCGTGCCAAAGAATCAACAAAATCTGCAGTTTTGATGAATCTAGAGTCCAGGATGATCGTGTCTGAGGATATTGGGAGGCAGATTTTGACATATGGAGAAAGGAAACCTGTAGAGCACTTCTTAAAGGCCGTAGACTCAATCACTTTGAACGATATTACTAACATTGCCCAGAAAGTTATATCTTCTCCTTTAACGATGGCATCATACGGAGACGTTATTAATGTCCCAACCTACGAGTCTGTTAACAGCAGAGAAGTGAGAGCGAAGAAACCACAACCAAAACAGAGAAGGGAAAATTTCAGAGGGAATTTCTTTGATTCATTAACTCGGCGAAGATCGAAAATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTATTTGGGCTCAGAGCACCGGTTTCCCTCAGTACAAGCCAGAAGAGATTACTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCTCCGACTGGGTTGCACCTTGGTGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAAACCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTAAAAAATAACAGTGTGAAGAATCAGGATGAAGAGCAAGAGTGTGGTGATTTTGGTCGTTGA 2046 45.26 MHRIAGSRLRSLKNHAANLGASRFATSSAVAARPTSGGFFSWLTGERSSSLPPLETPLSGITLPPPLPDHVEPSKTKITTLPNGVRIASETSSNPAASIGIYLDCGSIYETPVSSGASHLLERLAFKSTTNRSHLRIVREVEAIGGNTGASASREQMGYTFDALKTYVPEMVELLVDCVRNPVFLDWEINEELQKLKAEIGELANNPQGLLLEAIHSAGYSGALANPLVAPEFALSRLDGTILEEFIAENYTAPRMVLAASGVEHEELLSIAEPLLSDLPKVPIVRVPESAYVGGDYRRQADCGSTHVALAFEVPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTGSDFVAQAVDIAASELISIATPGQVSQVQLNRAKESTKSAVLMNLESRMIVSEDIGRQILTYGERKPVEHFLKAVDSITLNDITNIAQKVISSPLTMASYGDVINVPTYESVNSREVRAKKPQPKQRRENFRGNFFDSLTRRRSKMSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSIWAQSTGFPQYKPEEITAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGLKNNSVKNQDEEQECGDFGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28238065 28245870 - ClG42_07g0133800.10 Clacu07g1338 253936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1338 681 SMART prof_2 532 662 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 CDD PROF 533 661 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 SUPERFAMILY Profilin (actin-binding protein) 533 661 IPR036140 -
Clacu07g1338 681 PRINTS Profilin signature 552 561 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Profilin signature 595 609 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Profilin signature 534 543 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Profilin signature 571 591 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Profilin signature 631 644 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Profilin signature 644 661 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 Pfam Peptidase M16 inactive domain 243 421 IPR007863 -
Clacu07g1338 681 Pfam Insulinase (Peptidase family M16) 86 231 IPR011765 -
Clacu07g1338 681 SUPERFAMILY LuxS/MPP-like metallohydrolase 292 496 IPR011249 GO:0046872(InterPro)
Clacu07g1338 681 FunFam Mitochondrial-processing peptidase subunit beta 66 281 - -
Clacu07g1338 681 Gene3D - 67 278 - -
Clacu07g1338 681 FunFam Profilin 532 662 - -
Clacu07g1338 681 Pfam Profilin 532 662 IPR048278 GO:0003779(InterPro)
Clacu07g1338 681 ProSitePatterns Insulinase family, zinc-binding region signature. 106 129 IPR001431 GO:0004222(InterPro)|GO:0006508(InterPro)
Clacu07g1338 681 Gene3D Dynein light chain 2a, cytoplasmic 530 662 - -
Clacu07g1338 681 PANTHER METALLOPROTEASE 72 496 IPR050361 GO:0005739(PANTHER)
Clacu07g1338 681 FunFam mitochondrial-processing peptidase subunit alpha 290 498 - -
Clacu07g1338 681 SUPERFAMILY LuxS/MPP-like metallohydrolase 75 284 IPR011249 GO:0046872(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 648 661 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 615 630 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 558 571 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 602 611 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 532 545 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 583 597 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 PRINTS Plant profilin signature 635 648 IPR005455 GO:0003779(InterPro)
Clacu07g1338 681 Gene3D - 290 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1338 Clacu-Chr7:28238065 Clacu11g1685 Clacu-Chr11:28089125 7.80E-53 dispersed
Clacu07g0736 Clacu-Chr7:17521905 Clacu07g1338 Clacu-Chr7:28238065 7.20E-54 transposed
Clacu11g0340 Clacu-Chr11:3068139 Clacu07g1338 Clacu-Chr7:28238065 4.90E-209 transposed
Clacu11g0347 Clacu-Chr11:3143179 Clacu07g1338 Clacu-Chr7:28238065 1.70E-60 wgd
Clacu07g1338 Clacu-Chr7:28238065 Clacu09g0029 Clacu-Chr9:366032 4.00E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1338 K01412 - csv:101217854 934.865