Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1347 ATGGCAACTCTCCAATTCTTCCTTCTCATTTTTCTTTCCAGTTTCGCTCTCTTTCATTTCGTCTCTGCAGAGAATCCTTCAGGTTTCATCAGTTTAGACTGTGGACTTCCGGCGAACTCCACATACACAGAGCCAAACACCGGAATAATCTACGAATCCGATGCGGCGTTCATAAATTCTGGTGAAATCCACAACGTTTCCGCTGATAACATAAAGAATGGCTTGAAACAGCCGATGTGGAGTCTGAGGAGCTTTCCGGAAGGAATTAGGAATTGTTACAAATTGAAAGTGAGGAACGGGACGAAGTATTTGATTCGAGCGGCTTTTTGGTACGGAAATTACGATGGTAAAAGGAATTCACCTGGATTTGATCTGTATTTCGGAGCAAATTTTTGGGACTCGGTTGCATTTGAAGGAAATTTTACAGTGAGGAAGGAGATTGTGCATATAGTTTCATCAAGTGATGTGCAAATTTGTGTCGTGAATGTTGGAACTGGAATTCCATTCATTTCGGCTCTGGAATTGAGGCCTCTAAAAGACTCTGTTTACGAGACTGGATCTCTGACATTAGCTAATTTCCTACGCCTCGATTTCGGCTCCCTTGATAATCAAACTATCAGGTATCAAGACGACGTCTACGATCGAATCTGGGATCCACCAGTTCCCATTCGAGGATGGACAACCTTAAACACTTCGGAGAAAGTTTCCGTGGACGATCCGCTCTTCTTCCAACCGGCTCCGGCGGCCATGAACACGGCGGCGACACCGAGTAACGAAAGCGCTCCGATGGCGTTCACTTGGCTGCCACCGGATTCGACGACGGCGTTTTTCGTGTACATGTACTTTGCGGAGCTGAAGGTGCTTGGAGCGAATGAGTCGAGAGTGTTCGACGTATTTCTGAACGGAAAACGATGGATTAATGAATCGCTTTCTCCCAGCTATTTAGCGGAATTGGCGTTTTACAGTACCACGCCTCTGACCGGCGGAACCTACCAGATCTCCTTCGTCAGAACTCCCAATTCAACTCTTCCTCCCATTCTCAATGCCCTTGAGATTTATCGAGTTCTTAATTTATCGCTATCCGAGACCAGTGGGCAAGATGTTGTCGCCATTGAAAACATCAAGGCAATTTATGGAGTTAAAAGAAACTGGCAAGGAGATCCCTGTGCCCCAAAGGACTTCATTTGGGAAGGACTCAACTGTAGCTTTTTGAATTCTGAGCCTCCCAGAATCATATCCTTGGATTTGTCCTCAAGTGGACTGACAGGGGAAATACCTCGAGCGATAGCAAATCTTAAAATGCTGGAGTCTTTAGATCTATCAAACAATAATTTGAGTGGACCAGTGCCTGATTTTCTCACTCAATTGCCATCCTTGCGAGTTCTAAACTTGGAAAGAAACAAGCTTTCAGGACTAATTCCGGCCCAGCTCGTAGAGAAGTCCAATAATGGCTCTCTGACATTAAGATTTGGTGATAATCCAAATCTGTTTACTACGCCTGAAAGGAGAAAGAAGCAAAGCAATGTTGTTGTTCCTGTAGTAGCATCAGTTGTTGCATTTCTTCTGCTTTCGTTCTTAATTGCAGCGGCTATCTTTTGGAAGACAAAAAGAAGAAAATCAAAAGGAGCCGAAATTAGAGTGGTGAAACAAACTGTTGATCAATCTCAAAATTGGGACACAGCCAAGAGATGTTATTCATACTCAGATGTACTAAGAATGACAAACAATTTCGAGCGTATGCTTGGAGAAGGCGGCTTTGGAAGAGTTTACTATGGAAAAATTGAGAACGCTGAAGTAGCTGTAAAAATGCTATCTCCTCAATCAGTTCAAGGCTATCAACAATTTCAAGCAGAGGTTGAGCTTCTTATGAGGGTTCACCATAGAAACTTGACTGGTCTTGTTGGGTATTGCAATGAACCAGCCTACAAAGGACTTATCTACGAGTACATGGCCAGAGGGAACTTAGGATCTCTCATGTCAGATGGCAAGTCAGCTTTGTTGAACTGGGAAGTCAGACTTCATATAGCAGTGGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGATGTAAAATCTTCCAACATCTTATTGGATGACAACTTTCAAGCAAAAGTATCTGATTTTGGCTTGTCGAGAATTTTTCCCGTCGACGATGGTGCCACTCATGTGACAACCAATGTGGTTGGCACTCCTGGTTACCTCGACCCTGAATACTACACATCTTATAGATTAAACGAAAAAAGCGACGTGTATGGCTTCGGAATTGTTCTTCTAGAAATCATAACTGGGAGACCAGTTTTGACAAAGACTCAAGACAAGGTAACTCACATCTATCAATGGGTCGACTCAATGGTTTCTCAAGGTGATATCAGCTCCATCATCGATCCGAAATTGAAAGAAGATTTCGAGGTGAACACCATTTGGAAGGCGGTTGAAATAGCGATGTCGTGCGCATCTCCCATGTCTACAAATAGGCCAACTATGAGCCAAGTTGTGATACAATTGAACGAATGTTTGAATATGGAGTTAGCTCACAGTAATAACAATCATCAACCTGAATCTGTAGTTGAAGATCATGTTTCTCTGTTTGGTCCAGAAGCAAGGTAG 2634 43.17 MATLQFFLLIFLSSFALFHFVSAENPSGFISLDCGLPANSTYTEPNTGIIYESDAAFINSGEIHNVSADNIKNGLKQPMWSLRSFPEGIRNCYKLKVRNGTKYLIRAAFWYGNYDGKRNSPGFDLYFGANFWDSVAFEGNFTVRKEIVHIVSSSDVQICVVNVGTGIPFISALELRPLKDSVYETGSLTLANFLRLDFGSLDNQTIRYQDDVYDRIWDPPVPIRGWTTLNTSEKVSVDDPLFFQPAPAAMNTAATPSNESAPMAFTWLPPDSTTAFFVYMYFAELKVLGANESRVFDVFLNGKRWINESLSPSYLAELAFYSTTPLTGGTYQISFVRTPNSTLPPILNALEIYRVLNLSLSETSGQDVVAIENIKAIYGVKRNWQGDPCAPKDFIWEGLNCSFLNSEPPRIISLDLSSSGLTGEIPRAIANLKMLESLDLSNNNLSGPVPDFLTQLPSLRVLNLERNKLSGLIPAQLVEKSNNGSLTLRFGDNPNLFTTPERRKKQSNVVVPVVASVVAFLLLSFLIAAAIFWKTKRRKSKGAEIRVVKQTVDQSQNWDTAKRCYSYSDVLRMTNNFERMLGEGGFGRVYYGKIENAEVAVKMLSPQSVQGYQQFQAEVELLMRVHHRNLTGLVGYCNEPAYKGLIYEYMARGNLGSLMSDGKSALLNWEVRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDDNFQAKVSDFGLSRIFPVDDGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKTQDKVTHIYQWVDSMVSQGDISSIIDPKLKEDFEVNTIWKAVEIAMSCASPMSTNRPTMSQVVIQLNECLNMELAHSNNNHQPESVVEDHVSLFGPEAR 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28297381 28303589 + ClG42_07g0134700.10 Clacu07g1347 253945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1347 877 PANTHER OS07G0107800 PROTEIN-RELATED 23 852 - -
Clacu07g1347 877 Gene3D Phosphorylase Kinase; domain 1 547 649 - -
Clacu07g1347 877 SUPERFAMILY L domain-like 372 477 - -
Clacu07g1347 877 ProSitePatterns Protein kinases ATP-binding region signature. 581 602 IPR017441 GO:0005524(InterPro)
Clacu07g1347 877 Pfam Malectin-like domain 32 355 IPR024788 -
Clacu07g1347 877 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515(InterPro)
Clacu07g1347 877 Gene3D Transferase(Phosphotransferase) domain 1 650 870 - -
Clacu07g1347 877 FunFam Leucine-rich repeat receptor-like protein kinase 553 649 - -
Clacu07g1347 877 SUPERFAMILY Protein kinase-like (PK-like) 559 844 IPR011009 -
Clacu07g1347 877 Pfam Protein tyrosine and serine/threonine kinase 577 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1347 877 Gene3D Ribonuclease Inhibitor 369 488 IPR032675 -
Clacu07g1347 877 ProSiteProfiles Protein kinase domain profile. 575 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1347 877 SMART serkin_6 575 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1347 877 PRINTS Leucine-rich repeat signature 435 448 - -
Clacu07g1347 877 PRINTS Leucine-rich repeat signature 456 469 - -
Clacu07g1347 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1347 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 650 857 - -
Clacu07g1347 877 FunFam Leucine-rich repeat receptor-like kinase 366 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1347 Clacu-Chr7:28297381 Clacu09g0037 Clacu-Chr9:428384 2.30E-214 dispersed
Clacu07g1346 Clacu-Chr7:28290521 Clacu07g1347 Clacu-Chr7:28297381 4.90E-33 tandem
Clacu07g1347 Clacu-Chr7:28297381 Clacu07g1348 Clacu-Chr7:28307272 9.40E-192 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73708 PF12819 Malectin_like 2.50E-110 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1347 - - - 0.0