Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1364 ATGAGTCGGGAGCAGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATAGGAGATTGCATAACTCTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACCGATTCCTGTTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCAAGTGGGTCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCACAACCGAAAGTTCTTCGTTTGAACCTGGTTGGGTCTCCAAAGAAGGAACAAGAAGTGCCCTCTCCGTCACCTTCTGATATAGATGAAGGGTCTGAAAGCCATCAAAAAGAAAATAATGATCCTCTAGATTTCATACGGGGACCAGTTGTGACCCCCAGTAGCAGCCCAGAGTTGGGCACACCTTTTACTGTTACCGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTTAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCGGATATTGAGAATTTATCTGTATCTTCTGCGAGTTTAAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATAAGTGGAAGGTCACAGAGATGTGATGACATGAATCAAGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTTCTAAACTTGACAGAGAATCAAGCATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGAGATGTACGAGATGCAGTTTCATTATCCCGGAACACACCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTTAGCTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTTTTGGCTGAAGGAGGATATGGATCTGTTCACAGAGGGGTACTCCCAGATGGACAGGTGGTCGCCGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCACTGGATTCTCATTTATATGGACGCCAACAAGAGCCACTAGAATGGTCTGCACGGCAAAAAATTGCTGTGGGAGCTGCAAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATCACCCATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCGGACGGAGATACCGGTGTTGAAACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCGGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTAGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGCCCCTTGTTGGATGAATTTCTTATTGATGAACTGATTGATCCGAGGTTGGGAAATAACTTTGCAGAGCATGAAGTGTACTGCATGCTGCATGCCGCATCGTTATGCATCCGAAGAGATCCTAACGCAAGGCCTCGTATGTCACAGGTTTTACGAATTCTGGAAGGCGACCTCGTCATGGACGCTAATTACTTGTCAACTCCTGGATACGATATGGGAAATCGGAGTGGTCGGATGTGGACCGATCAGCAGCAGCAGCAGCAGCAGCAGCAAAACTACAGTGGCTCATTATCAGATGAGACTCTAGAGAGGTTCAATGAAAAAGTCTGTGTTGAGAGTTTAAGACCAGGTTACTGGGAAAGAGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAA 2265 44.5 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGSVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEQEVPSPSPSDIDEGSESHQKENNDPLDFIRGPVVTPSSSPELGTPFTVTEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDMNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLGNNFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDMGNRSGRMWTDQQQQQQQQQNYSGSLSDETLERFNEKVCVESLRPGYWERDKTRRTSSGSDL 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28461259 28465331 + ClG42_07g0136400.10 Clacu07g1364 253962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1364 754 MobiDBLite consensus disorder prediction 329 356 - -
Clacu07g1364 754 FunFam Dual-specific kinase DSK1-like 11 165 - -
Clacu07g1364 754 Gene3D HUPs 3 151 IPR014729 -
Clacu07g1364 754 PANTHER OS01G0750732 PROTEIN 138 706 IPR050885 -
Clacu07g1364 754 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
Clacu07g1364 754 Pfam Protein tyrosine and serine/threonine kinase 409 673 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1364 754 CDD STKc_IRAK 411 677 - -
Clacu07g1364 754 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1364 754 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 684 - -
Clacu07g1364 754 Gene3D Transferase(Phosphotransferase) domain 1 481 685 - -
Clacu07g1364 754 MobiDBLite consensus disorder prediction 220 254 - -
Clacu07g1364 754 MobiDBLite consensus disorder prediction 698 718 - -
Clacu07g1364 754 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1364 754 SUPERFAMILY Protein kinase-like (PK-like) 389 686 IPR011009 -
Clacu07g1364 754 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Clacu07g1364 754 MobiDBLite consensus disorder prediction 694 718 - -
Clacu07g1364 754 MobiDBLite consensus disorder prediction 342 356 - -
Clacu07g1364 754 MobiDBLite consensus disorder prediction 175 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2110 Clacu-Chr5:29894069 Clacu07g1364 Clacu-Chr7:28461259 5.00E-162 dispersed
Clacu07g1364 Clacu-Chr7:28461259 Clacu11g0384 Clacu-Chr11:3501975 1.60E-86 dispersed
Clacu08g0777 Clacu-Chr8:17824246 Clacu07g1364 Clacu-Chr7:28461259 4.20E-87 transposed
Clacu11g1488 Clacu-Chr11:26026889 Clacu07g1364 Clacu-Chr7:28461259 2.10E-81 transposed
Clacu03g1611 Clacu-Chr3:29760836 Clacu07g1364 Clacu-Chr7:28461259 5.60E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73710 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1364 - - - 0.0