Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1366 ATGGCAATGGAGGGAAAGCAGAAGTTCTTCCATGGAACGCTTGAAGTTACCATCTTCCATGCAACGGCTTACACCCCGCCATCACCTTTGGATTGCATATTTGCTGGAGGAAAGCGTAGCTATGTGACCATCAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGCGCACATCCATTGACTTCTACTGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCTACATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGATGAGTCCGGAGCTCAAACTTCGATTCATGCTATGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTTACTCTGTATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAAAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACAGATATACCCTATGCTTTAGGAGTAACGCTTGGAGAGTTGTTGAAGCAGAAGGCAGAAGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCCCTTCCTATCATTAAGAATGCTGGGATAATGAACACACATGATGAAGATGCTCGCGCATATTTCTTGCACTCAAAAGTCATATGTAGATTGTGCCCCAAATTACATCCTATGTCTCCCCCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTAGATCTTTGTGATGGTCGCTACGATACAGAACAACACTCACTGTTTCATACTTTGAACACAGAATCCCACTGTTGTGATTTCTATCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCATGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTTGTTGTTAGTACCGACAAGCATCTTATCAAAATTGATGCCCCAGCTCGAATCGAACACAAGCCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACTATTTGTCTGCTGGCCAAATGTTCAGAAACATGACCATTGAACGAACCATCCATGAAGCTTACGTTGAAGCTATCAGGCGAGCCGAGAGATTTATTTACATTGAAAACCAATATTTTATAGGAGGGTGTCACTTGTGGGACAAAGATCAACATTGTGGATGCACGAATTTGATACCGATTGAGATTGCGCTCAAGGTGGCTAATAAGATTAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCTCCAGAGAGTGAATCAGTTCAGGATATGCTACACTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGCCCATCCAAGAGATTACCTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGGGAAAGTGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATTGGATCCGCAAACGTAAACCAGAGATCCATGGACGGAGAGAGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAATGATGGAAAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACACGAAGATTCGAAGAACTGTTCTTAAACCCCGAAAGCTTGCAATGCGTTCAAAGGGTTTGTTCAATAGGAGATAAATCGTGGAAAATTTACAGTGGAGAAGAAGTTGAAGACATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAGGATGGGTCGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACCAAATGCCCCATTAAAGGAAGAAGATCAATGATGTTGCCGCCCATTTTCACAACCTAG 2286 42.52 MAMEGKQKFFHGTLEVTIFHATAYTPPSPLDCIFAGGKRSYVTIKIDNKEVAQTSHEHDRVWNQTFRVLCAHPLTSTVTITMKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKMSPELKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPKRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVTLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDALLLVPTSILSKLMPQLESNTSPQKDWNVQVFRSIDYLSAGQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVQDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEEGKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGKELPNGRDISTFRLSLWYEHTRRFEELFLNPESLQCVQRVCSIGDKSWKIYSGEEVEDMKGVHLVTYPVKVKEDGSMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28479150 28481920 + ClG42_07g0136600.10 Clacu07g1366 253964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1366 761 Gene3D Endonuclease Chain A 173 431 - -
Clacu07g1366 761 Pfam Phospholipase D Active site motif 608 633 IPR001736 GO:0003824(InterPro)
Clacu07g1366 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Clacu07g1366 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Clacu07g1366 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Clacu07g1366 761 Pfam C2 domain 12 108 IPR000008 -
Clacu07g1366 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
Clacu07g1366 761 Gene3D C2 domain 2 131 IPR035892 -
Clacu07g1366 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Clacu07g1366 761 SUPERFAMILY Phospholipase D/nuclease 144 408 - -
Clacu07g1366 761 Gene3D Endonuclease Chain A 448 652 - -
Clacu07g1366 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu07g1366 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 124 IPR035892 -
Clacu07g1366 761 SUPERFAMILY Phospholipase D/nuclease 423 690 - -
Clacu07g1366 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1366 Clacu-Chr7:28479150 Clacu09g0279 Clacu-Chr9:2499428 1.90E-172 dispersed
Clacu07g1366 Clacu-Chr7:28479150 Clacu07g1268 Clacu-Chr7:27519475 7.60E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1366 K01115 - csv:101206396 1514.98