Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1387 ATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGTAAATCCTGGTCATGTCGAATTCACACGGCTAAAGTTAGTGACGGACACAGTAAATTTATTCTCTGCATCGTCCCCTGAGTCAGGTTCTATTGGTAATGGTAGTTGCCATGATTTTAATGGTATAGTTGACAGCATAACTGTGTCACAACCGACTGATAATGGTCAAGGTATCGACAGTTTTTGGGGGTTGTTACCAAAGAATGGCACGAATTTGACCGTAGATAAGGAAGGTGCATCCTTAGCTACTCTGGATGACCCTGATGAAATGATAGACGATGGGTTGTTTGCTATTGATGGCGGTTCAAGTATTAATGTGCAAGAAGTTGTCAAAATTGGAGATGTTGCTAATGGTCATATTGTTGCAAAGGCTATCATCTTGGTGGAATCAGGGAAGATGCCTACTAGTGAACTTATTGTGGCGACAGTAAGCCCAGATTTAGAAGTATCTGCATCGTCAGAGCTAAACGTCCCTGCAGTAGTTTTCCAATCGAAAGGGGGGGATAGTGTTCATAAAGGCATTCGTAGTGTCTTTGAACGCGATTGTATCCCCCTTTGGGGGTCCGTATCAATTTGTGGTAGAAGACCAGAAATGGAAGATGCAATTGCTGCCGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGAAATGGTATGCTGAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCGAGAGCGTATACACTTGGCACTAGCTGAAGAGATAAGCGGATTCAAACAAAATCAAAATAATGGAAGCAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTTTACAATTGTTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGTAGAACAGTCCGTGGGAGTGGTGGAGATGTTTCCGATACAAGCTTCGAGCCTGTTGCCCCGGAAACTGTTGGCTCTACGGCTGTTGTTGCATTGGTATGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCCATGGCTCTATCGGTCGATCACAAACCAAATCGCGAAGATGAATTCACTAGGATTGAATCATCTGGAGGCAAGGTCATCCAGTGGAATGGACATCGCGTGTTTGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAACCATGGATTATTCCTGATCCAGAAGTCATGTTCGTTCCTCGTGCGAAAGAAGACGAATGTCTTATTTTAGCCAGTGATGGACTGTGGGATGTGATGACAAATGAGGAAGTCTGTGAAATAGCTCGAAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCTTCGTCTCTTGCCGATCGGGGCACAGGAGTTGACCCAGCTGCTCAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAGGACAACATCTCTGTCATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 43.89 MMEEMSPAVSLTLSLGNPKSDSSVNPGHVEFTRLKLVTDTVNLFSASSPESGSIGNGSCHDFNGIVDSITVSQPTDNGQGIDSFWGLLPKNGTNLTVDKEGASLATLDDPDEMIDDGLFAIDGGSSINVQEVVKIGDVANGHIVAKAIILVESGKMPTSELIVATVSPDLEVSASSELNVPAVVFQSKGGDSVHKGIRSVFERDCIPLWGSVSICGRRPEMEDAIAAVPCFAKIPIKMLVGNGMLNGMGQSLTHLNSHFFGVYDGHGGPQVADYCRERIHLALAEEISGFKQNQNNGSNGENWQQDWERTFYNCFLRVDDEIEGKVGRTVRGSGGDVSDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEFTRIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEIARRRILLWHKKHGASSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28696181 28698350 - ClG42_07g0138700.10 Clacu07g1387 253985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1387 536 CDD PP2Cc 210 526 IPR001932 -
Clacu07g1387 536 SMART PP2C_4 198 524 IPR001932 -
Clacu07g1387 536 FunFam Protein phosphatase 2C 16 196 536 - -
Clacu07g1387 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Clacu07g1387 536 Gene3D - 195 536 IPR036457 -
Clacu07g1387 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Clacu07g1387 536 PANTHER PROTEIN PHOSPHATASE 181 525 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu07g1387 536 MobiDBLite consensus disorder prediction 10 24 - -
Clacu07g1387 536 SUPERFAMILY PP2C-like 200 527 IPR036457 -
Clacu07g1387 536 MobiDBLite consensus disorder prediction 1 24 - -
Clacu07g1387 536 Pfam Protein phosphatase 2C 236 519 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1657 Clacu-Chr3:30213806 Clacu07g1387 Clacu-Chr7:28696181 4.60E-74 dispersed
Clacu05g1042 Clacu-Chr5:9251315 Clacu07g1387 Clacu-Chr7:28696181 4.90E-58 dispersed
Clacu07g1387 Clacu-Chr7:28696181 Clacu08g1154 Clacu-Chr8:21589487 5.80E-144 dispersed
Clacu07g1387 Clacu-Chr7:28696181 Clacu03g0119 Clacu-Chr3:1341008 1.80E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1387 K14497 - csv:101203499 1011.52