Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1389 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCGATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCAAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGATTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACAACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2046 44.43 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28715675 28725027 + ClG42_07g0138900.10 Clacu07g1389 253987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1389 681 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Clacu07g1389 681 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu07g1389 681 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 305 667 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Clacu07g1389 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 681 IPR001650 -
Clacu07g1389 681 Pfam DEAD/DEAH box helicase 333 495 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu07g1389 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 509 IPR014001 -
Clacu07g1389 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Clacu07g1389 681 SMART h15plus2 111 176 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu07g1389 681 Gene3D - 8 86 - -
Clacu07g1389 681 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Clacu07g1389 681 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Clacu07g1389 681 SMART ultradead3 327 524 IPR014001 -
Clacu07g1389 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 662 IPR027417 -
Clacu07g1389 681 Gene3D - 517 681 IPR027417 -
Clacu07g1389 681 FunFam Telomere repeat-binding factor 1 8 87 - -
Clacu07g1389 681 CDD DEADc_EIF4A 313 510 - -
Clacu07g1389 681 SMART helicmild6 561 642 IPR001650 -
Clacu07g1389 681 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu07g1389 681 FunFam Telomere repeat-binding factor 1 2 58 - -
Clacu07g1389 681 FunFam Eukaryotic initiation factor 4A-III 516 681 - -
Clacu07g1389 681 CDD SANT_TRF 6 56 - -
Clacu07g1389 681 Pfam Helicase conserved C-terminal domain 534 642 IPR001650 -
Clacu07g1389 681 SUPERFAMILY Winged helix DNA-binding domain 110 192 IPR036390 -
Clacu07g1389 681 Gene3D - 110 197 IPR036388 -
Clacu07g1389 681 Gene3D - 298 516 IPR027417 -
Clacu07g1389 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724(InterPro)
Clacu07g1389 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Clacu07g1389 681 CDD SF2_C_DEAD 521 651 - -
Clacu07g1389 681 FunFam Eukaryotic initiation factor 4A-II 296 515 - -
Clacu07g1389 681 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1832 Clacu-Chr1:30466358 Clacu07g1389 Clacu-Chr7:28715675 8.90E-15 dispersed
Clacu07g1389 Clacu-Chr7:28715675 Clacu10g1188 Clacu-Chr10:24625045 1.00E-140 dispersed
Clacu01g2558 Clacu-Chr1:35836165 Clacu07g1389 Clacu-Chr7:28715675 1.60E-24 transposed
Clacu05g0192 Clacu-Chr5:1732550 Clacu07g1389 Clacu-Chr7:28715675 1.70E-72 transposed
Clacu05g1369 Clacu-Chr5:14923209 Clacu07g1389 Clacu-Chr7:28715675 2.70E-56 transposed
Clacu05g2699 Clacu-Chr5:34573706 Clacu07g1389 Clacu-Chr7:28715675 3.40E-12 transposed
Clacu06g1837 Clacu-Chr6:28918003 Clacu07g1389 Clacu-Chr7:28715675 1.60E-44 transposed
Clacu07g0211 Clacu-Chr7:2467682 Clacu07g1389 Clacu-Chr7:28715675 2.80E-45 transposed
Clacu07g1368 Clacu-Chr7:28494704 Clacu07g1389 Clacu-Chr7:28715675 1.10E-50 transposed
Clacu08g1486 Clacu-Chr8:24838638 Clacu07g1389 Clacu-Chr7:28715675 4.70E-63 transposed
Clacu09g0310 Clacu-Chr9:2685579 Clacu07g1389 Clacu-Chr7:28715675 8.40E-49 transposed
Clacu10g1392 Clacu-Chr10:27048114 Clacu07g1389 Clacu-Chr7:28715675 2.40E-48 transposed
Clacu11g2086 Clacu-Chr11:31666719 Clacu07g1389 Clacu-Chr7:28715675 4.00E-49 transposed
Clacu07g1389 Clacu-Chr7:28715675 Clacu09g0083 Clacu-Chr9:765115 8.50E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48074 PF00270 DEAD 1.10E-39 CL0023 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1389 K03257 - csv:101223055 817.379