Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1407 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCTGCCGCCGCCGATGAACAACCCGACCACGCCGCTTTCCCGCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAGTAGTAATAATAATAATGATGATAAATACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCCAACAATAATAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAGCCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCATCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCAGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCAACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCGTCCTCGCAACCTCTCTTGGCCATTACTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTTTGGTGTGACAATACTGCTACAGACGATAATAATCAGCACCACGAGAATGTAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCAAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGGTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCGCTATGGAACCAATGA 1623 46.15 MSNWLGFSLTPHLRIHDAAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNSSNNNNDDKYHYQADHQTHQSLIPNNNNGIYKSWLGPTPQNECRFQSLSLGMSPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAITGDGGAESHHELADVVWCDNTATDDNNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGGGGEYSQGYFSMQEEKYEDGNEEGDQNSRQVSVTLAHHHVPMFALWNQ 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28901855 28905584 + ClG42_07g0140700.10 Clacu07g1407 254005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1407 540 CDD AP2 208 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 108 442 - -
Clacu07g1407 540 MobiDBLite consensus disorder prediction 76 110 - -
Clacu07g1407 540 Gene3D AP2/ERF domain 208 277 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 Gene3D AP2/ERF domain 311 371 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 ProSiteProfiles AP2/ERF domain profile. 311 369 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 FunFam AP2-like ethylene-responsive transcription factor 310 371 - -
Clacu07g1407 540 SUPERFAMILY DNA-binding domain 310 371 IPR016177 GO:0003677(InterPro)
Clacu07g1407 540 ProSiteProfiles AP2/ERF domain profile. 209 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 MobiDBLite consensus disorder prediction 396 417 - -
Clacu07g1407 540 CDD AP2 310 371 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 MobiDBLite consensus disorder prediction 150 184 - -
Clacu07g1407 540 FunFam AP2-like ethylene-responsive transcription factor ANT 208 277 - -
Clacu07g1407 540 PRINTS Ethylene responsive element binding protein signature 351 371 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 MobiDBLite consensus disorder prediction 150 164 - -
Clacu07g1407 540 MobiDBLite consensus disorder prediction 71 113 - -
Clacu07g1407 540 Pfam AP2 domain 312 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 Pfam AP2 domain 209 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 SMART rav1_2 209 281 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 SMART rav1_2 311 375 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu07g1407 540 MobiDBLite consensus disorder prediction 392 417 - -
Clacu07g1407 540 SUPERFAMILY DNA-binding domain 208 277 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2134 Clacu-Chr2:34503275 Clacu07g1407 Clacu-Chr7:28901855 1.20E-39 dispersed
Clacu04g0924 Clacu-Chr4:23529133 Clacu07g1407 Clacu-Chr7:28901855 3.80E-45 dispersed
Clacu05g2858 Clacu-Chr5:35791000 Clacu07g1407 Clacu-Chr7:28901855 1.40E-102 dispersed
Clacu07g1407 Clacu-Chr7:28901855 Clacu11g0957 Clacu-Chr11:10166870 7.30E-94 dispersed
Clacu07g1407 Clacu-Chr7:28901855 Clacu08g1833 Clacu-Chr8:27592094 6.50E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48077 PF00847 AP2 4.20E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1407 K09285 - csv:101205762 875.159