Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1417 ATGCACCTTCTTTCCCACCATTTCTTGCTACTGCTACTGCTACTGGTATGCTTCTCTTTTTCCTTTCATGTTGTTTCTGGCCTAAGCTTTGATGGGTTGTCTTTATTGTCTCTCCAAACCCACTGGATTTCCGATACCCCTTTTGTCCCTTTCTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGGATGGGATTGAGTGTGATCAAAACCTTCGTGTTATCACCTTCAATCTCTCAAACCATGGCATTTCGGGTCAGCTTGGACCCGAAATTGCACGTTTGACCCACTTGCGTACCATTGATTTGAACACCAATGGTTTCTCTGGTGAAATTCCTTATGGGATAGCTAACTGTAGCCATTTAGAGTACTTGGATCTCTCCCTGAACCAATTTGCTGGAGAAATTCCTCACTCCTTAACTCAACTTGGGAACTTGACGTTTGTGAACTTCCATGCCAACGTTCTAACCGGTCATATACCAGACTCGCTTTTTCAAAATCTGAATTTGCATGAAGTGTATCTTAGTGAAAACAATCTCAATGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAACTATTGCATTTGTTTCTGTATGGAAATCAGTTGTCTGGTACCATACCTTCTTCCATAGGGAATTGTAGTCAATTGGTGGATCTCTATTTGAATCAGAACCAGTTGGCAGGAGTGTTGCCCAATAGTCTTAACAATCTTGATAATCTTGTTCATTTGGGTGTCAGCCACAACAATCTTGAAGGTGCAATTCCTTTGGGTTCAGGAGGTTGCCAGAGTTTAGAATATATAGATTTGTCATTCAATGGCTATACAGGAGGTATACCTGCCGGGCTGGGCAACTGTAGTGGCTTAAGAATCTTACTCATTATAAATTCAAGTCTAACAGGTCATATTCCTTCCTCCTTTGGCCGCCTAAGTAATCTTACGATTCTTGATCTCTCTAGAAATCAACTGTCTGGTAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAACTTGATTTGTACGTCAACCAACTTGAGGGAGGTATCCCTAGTGAATTGGGTTTGATAAGTGGATTAGAGACCCTTCAATTGTTTTCAAACCGGTTGACTGGTGAGATTCCGATTAGCATCTGGAAGATTGCAAGTCTCCAACATATTCTTGTGTACGACAACAACCTCTCTGGGGAACTGCCCTCGATAATAACTGAACTCAAGCACCTCAAAAACATTACTGTATTCGACAACCATTTTTCTGGAGTCATACCTCAAAGCTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACCAATAACCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCGGGAAAGACATTAAAGGTGTTAAACTTAGGTTTGAACCAATTTCAAGGTAGCATACCTTCAGATATTGGAACCTGCGTGACCCTTCAGAGGTTGATTTTGAGAAGGAATAATCTAACAGGGGTTCTGCCAGAATATATGAGAAATCACGGCCTTCGGTTCATGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCCTCAGGTTTGGGAAATTGCATCAATCTCACCTCAATAAATTTGTCAAGGAACAAGCTTACAGGTCTTGTACCGTATGAGTTGGGAAATCTTGTGAATATTCAAAGTTTGAGCTTGTCTCACAACTTCTTGGAAGGACCTTTGCCATCTTCCCTGTCAAATTGTACCATGTTGAGTAATTTTGACGTAGGATTCAATTTATTGAATGGTTCTATATCTCGTAGTTTGGCCGGCTGGAAAGTTATATCCACATTGATATTAAAAGAGAATAGATTTACCGGAGGCATTCCGAATGTATTATCAAAACTTGAAAGCCTTTCAGTACTAGATCTTGGTGGCAATTTGTTTGGAGGAGAAATCCCTTCATCCATTGGAGGTTGGAAGAATATGTTTTATTATCTGAATCTTAGTGAAAATGGGTTAACTGGCCAAATACCTTCTGAGCTGAAGAATTTGGTCATGGTAGAGAAGTTGGATATGTCTCACAATAATTTGACAGGAAGTATAAGAGTTCTCGGTGAACTAAGTTCATTGTTAGTCGAGTTTAACATTTCAGATAATTTCTTCACGGGTCCTGTGCCACAGACATTAATGAAGTTTCTGAATTCTCGTCCTTCATCGTTCTTAGGCAATCCTGGGCTGTGCATCAGCTGTGATGAACTAGATGGCTTAAGTTGCAATGGAAGTAGCAGTATCAAACCTTGCGCTAGCCATTCGAGCTCTCGTGATAGCTCTCGTCTTAACAATATACAAATTGCAATGATAGCTCTTGGATCTTCAATCTTTATTGTTTTCCTGCTTCTTGGGTTGGTTTATAAATTTGTTCATATCAGAAGAAACAAGGAAAAAATTGACACCTCTGCTCAAGTAGGAACTTCTTTGCTTGTCCACATGGTAATGGAGGCCACTGATAATCTAGATGAGCGTTTCGTCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCTTCACTTGATTCGAAGGGAACTTTTGCTGTCAAGAAGCTTACATTTGAAGGATGTAAAGGGGCAAGCCAGAGTATGATTAGGGAAATTAAAACTGTTGGTAACATCAAACACCGAAACCTGATTGCTTTGGAAGATTTTTGGTTGGGAAAAGACTATGGTCTATTACTTTACAGATACCAGCCTAATGGGAGTCTTGATGATGTGTTGCATCAGATGAATCCTGCTCCAGCTCTAACATGGGAAGACCGTCATAATATAGCCATTGGTATTGCACATGGATTGTCATATCTTCATAACGATTGTGATCCTCCTATAATACACTGTGACATTAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCATATTGCTGATTTTGGTCTTGCAAAGCTGCTGGACCAAACTTCTGCACCAATGGCTTCGTCTTCTTTTGCAGGAACAATTGGCTACATTGCACCAGAGAATGCATTCTCAGCAGCAAAGAGCAAAGCTTCAGATGTTTACAGCTACGGAGTGGTTTTACTTGAGCTGATAATGAGAAAGAAGCCATCGGATCTATCATTTACCGAGGTGGGGAGTATCATGGCTTGGGTTCGGTCGGGTTGGAACGAGACAGGAGAAATAGATAGTATAGTAGATCCAATGCTTGTGGAAGAACTTGTAGATTCTAATAGAAGGGAGCAGATTAAGAAGGTGGTCTTGGTGGCTTTGAGATGCACAGAAAAGGACCCTAACAAGAGACCTACGATGAGAGATGTTGTGAACCACTTGATCGATTCGAAGACAAGTCATTAA 3324 40.91 MHLLSHHFLLLLLLLVCFSFSFHVVSGLSFDGLSLLSLQTHWISDTPFVPFWNASDSTPCSWDGIECDQNLRVITFNLSNHGISGQLGPEIARLTHLRTIDLNTNGFSGEIPYGIANCSHLEYLDLSLNQFAGEIPHSLTQLGNLTFVNFHANVLTGHIPDSLFQNLNLHEVYLSENNLNGSIPSNVGNLRQLLHLFLYGNQLSGTIPSSIGNCSQLVDLYLNQNQLAGVLPNSLNNLDNLVHLGVSHNNLEGAIPLGSGGCQSLEYIDLSFNGYTGGIPAGLGNCSGLRILLIINSSLTGHIPSSFGRLSNLTILDLSRNQLSGNIPPEFGACKSLKELDLYVNQLEGGIPSELGLISGLETLQLFSNRLTGEIPISIWKIASLQHILVYDNNLSGELPSIITELKHLKNITVFDNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLKVLNLGLNQFQGSIPSDIGTCVTLQRLILRRNNLTGVLPEYMRNHGLRFMDASENNLNGTIPSGLGNCINLTSINLSRNKLTGLVPYELGNLVNIQSLSLSHNFLEGPLPSSLSNCTMLSNFDVGFNLLNGSISRSLAGWKVISTLILKENRFTGGIPNVLSKLESLSVLDLGGNLFGGEIPSSIGGWKNMFYYLNLSENGLTGQIPSELKNLVMVEKLDMSHNNLTGSIRVLGELSSLLVEFNISDNFFTGPVPQTLMKFLNSRPSSFLGNPGLCISCDELDGLSCNGSSSIKPCASHSSSRDSSRLNNIQIAMIALGSSIFIVFLLLGLVYKFVHIRRNKEKIDTSAQVGTSLLVHMVMEATDNLDERFVIGRGAHGVVYKASLDSKGTFAVKKLTFEGCKGASQSMIREIKTVGNIKHRNLIALEDFWLGKDYGLLLYRYQPNGSLDDVLHQMNPAPALTWEDRHNIAIGIAHGLSYLHNDCDPPIIHCDIKPQNILLDSEMEPHIADFGLAKLLDQTSAPMASSSFAGTIGYIAPENAFSAAKSKASDVYSYGVVLLELIMRKKPSDLSFTEVGSIMAWVRSGWNETGEIDSIVDPMLVEELVDSNRREQIKKVVLVALRCTEKDPNKRPTMRDVVNHLIDSKTSH 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28959860 28963281 - ClG42_07g0141700.10 Clacu07g1417 254015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1417 1107 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Clacu07g1417 1107 FunFam Predicted protein 302 401 - -
Clacu07g1417 1107 Pfam Protein kinase domain 829 1099 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1417 1107 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 414 744 - -
Clacu07g1417 1107 SUPERFAMILY RNI-like 77 420 - -
Clacu07g1417 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 279 - -
Clacu07g1417 1107 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 603 1097 IPR052592 -
Clacu07g1417 1107 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 504 525 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 623 644 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 651 670 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 551 573 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Clacu07g1417 1107 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 28 182 - -
Clacu07g1417 1107 SUPERFAMILY RNI-like 351 702 - -
Clacu07g1417 1107 Gene3D Phosphorylase Kinase; domain 1 796 900 - -
Clacu07g1417 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1417 1107 ProSiteProfiles Protein kinase domain profile. 824 1107 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1417 1107 ProSitePatterns Protein kinases ATP-binding region signature. 830 853 IPR017441 GO:0005524(InterPro)
Clacu07g1417 1107 SMART serkin_6 824 1101 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1417 1107 Gene3D Ribonuclease Inhibitor 358 430 IPR032675 -
Clacu07g1417 1107 Gene3D Ribonuclease Inhibitor 431 502 IPR032675 -
Clacu07g1417 1107 SUPERFAMILY Protein kinase-like (PK-like) 810 1100 IPR011009 -
Clacu07g1417 1107 Gene3D Ribonuclease Inhibitor 503 737 IPR032675 -
Clacu07g1417 1107 Gene3D Transferase(Phosphotransferase) domain 1 902 1107 - -
Clacu07g1417 1107 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 789 900 - -
Clacu07g1417 1107 FunFam Serine/threonine-protein kinase-like protein CCR4 901 1107 - -
Clacu07g1417 1107 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Clacu07g1417 1107 Gene3D Ribonuclease Inhibitor 190 357 IPR032675 -
Clacu07g1417 1107 SMART LRR_typ_2 549 573 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 215 237 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 670 693 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 142 166 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 238 262 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 94 118 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 525 548 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 190 214 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 310 334 IPR003591 -
Clacu07g1417 1107 SMART LRR_typ_2 621 645 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1417 Clacu-Chr7:28959860 Clacu07g1419 Clacu-Chr7:28977246 1.90E-104 dispersed
Clacu07g1420 Clacu-Chr7:28978388 Clacu07g1417 Clacu-Chr7:28959860 2.50E-09 dispersed
Clacu07g1417 Clacu-Chr7:28959860 Clacu07g1418 Clacu-Chr7:28967337 5.00E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73712 PF00069 Pkinase 9.70E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1417 K28089 - csv:101204802 1790.01