Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1418 ATGCAGCTTCTTCCCCGCCATTTCTTCCTACTGGTATGCTTCTCTTTCCCTATCTCTGTCGTTTTTGGCTTAACCTCAGATGGGTTGGCTTTATTGTCCCTTCAAACCCGCTGGACTACCCAAACCGCTTTTGTCCCTGTTTGGAATGCTTCTGATTCCACTCCCTGTTCTTGGGCTGGGATTGAATGTGATCAAAACCTTCTTGTCCTCACCTTGAATCTCTCTTATTATGGGGTCACGGGTCAGCTTGGACCCGAAATTGCACGTTTGACCCACTTGCGTACCATTGATTTGAACACCAACGGTTTCTCTGGTGAAATTCCTTATGGGATAGCTAACTGCAGCCATTTAGAGTTCTTGGATCTTTCCCTCAACCAATTTGGTGGAGAAATTCCTCAGTCATTAACGCTCCTTAGGAACTTGACGTTTTTGAACTTCCATGACAATGTTCTAACTGGTGCAATACCCGACTCCTTATTTCAAAGTCTTAATTTGCAGTATGTGTATCTTAGTGAAAACAATCTCAACGGTTCTATCCCTCCAAATGTGGGGAATTTGAGGCAACTAATTCATTTGTATCTGTATGGAAATCAGTTGTCTGGTACCATACCTTCTTCCATAGGGAATTGTAGCCAACTGGAGGATCTTTATTTGGATCAGAATCAGTTAGTTGGAATATTGCCCAACAGTCTTAACAATCTCGATAATCTTGTTAATCTGGGTGTAAGCCACAACAATCTTGAGGGTCCAATTCCTTTGGGTTCAGGCAGTTGCCAGAGTCTTGAATTTATAGATTTGTCTTTCAATGGTTATACAGGAGGTATACCAGCTGGGCTAGGCAACTGTAGTCGCCTAACAACCTTAATCATTGTCAATTCGAGTCTAACAGGTCATATTCCTTCCTCCTTTGGCCAGCTAAGTAACCTTTCGCATCTTGATCTCTCTAGAAATCAACTGTCTGGTAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAACTGGATTTGTACGTCAACCAACTTGAGGGAGGTATCCCTAGTGAATTGGGTTTGATAAGTGGATTAGAGACCCTTCAATTGTTTTCAAACCGGTTGACTGGTGAGATTCCGATTAGCATCTGGAAGATTGCAAGTCTCCAACATATTCTTGTGTACGACAACAACCTCTCTGGGGAACTGCCCTCGATAATAACTGAACTCAAGCACCTCAAAAACATTTCTGTATTCGACAACCATTTTTCTGGAGTCATACCTCAAAGCTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACCAATAACCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCGGGAAAGACATTAAAGGTGTTAAACTTAGGTTTGAATCAATTTCAAGGAAACATACCTTCTGATATAGGAAGTTGTTTGACTCTTCAGAGATTGATTTTGCAAAGGAACAACCTCACAGGGATTCTGCCACAATTTATGAGAAATCACAGCCTATCATACATCGATGCCAATGAAAATAACCTGAATGGAACAGTTCCATCAAGTTTGGGAAATTGCACCCTTCTCACTTCAATTAATTTGTCAAACAACAAGCTTACAGGTCATATACCAAATGAGTTAGGCAATCTTGTGAATCTTCAAAGTTTGAAATTGTCTCACAACTTCTTAGAAGGACCTTTGCCATCTTCCCTCTCAAATTGCACCAAAATGAATACGTTTGACGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGCCAGCTGGAAAGTAATATCCACTTTGATATTAAAAGAGAATGGATTTACTGGAGGCCTCCCGAATGTATTATCAGAACTTCAAAGCCTTTTACTACTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATTCCTTCAAATATTGGAGATTTACAGAATCTATTTTATTCCTTGAATCTAAGTAACAATGGGTTAACTGGTCAACTACCTTCTGAGCTCGCGAGTCTGATCAAGCTAGAGGGGTTGGATTTATCTCACAATAATTTGACTGGAAGTCTTAGTGTTCTTGGTGAACTTAGTTCATCGTTAATGGACCTTGACATTTCAGATAATTTCTTTACAGGTCCTGTGCCGCAAACATTAATGAAGTTACTGAAGTCTCATCCCTCATCGTTCTTTGGTAACCCTGGGCTGTGCATTAGCTGTGATGAACTAGATGGCTTAAGTTGCAATAGAAATATCAGTATCAGTCCTTGTGCTACTCATTCAAGCTCGCGTGGTAGCTCTCGTCTTGGCAAAGTACAGATTGCAATCATAGCTCTTGGGTCTTCACTCTTTATTATTCTTTTGCTTCTTGGGTTGGTTTATAAGTTTGTTTGTAGCAGAAGAAACAAGCAAAACATTGAGACTGCTGCTCAAGGAGGAACAACTTCCTTGCTTGAAAAGGTAATGGAGGCCACTGATAATCTAGATGAGCGTTTCATCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCCTCCCTGAATTCAAATAAAATTTTTGCAGTAAAGAAGCTTACATTTATAGAACGTAAAGGGGGAAGTCGGAATATGGTAAAAGAAATTAGAACTGTCAACAACATCAAGCACCGAAACTTGATCTCTTTGGAAGATTATTGGTTAGGAAAAGACCATGGTCTATTGCTTTACAAATACTATCCGAATGGAAGCCTTTATGATGTGTTGCATGGCATGAATCCAGCTCCAGCTCTAACATGGAAAGCCCGCTATAATATAGCAATTGGTATTGCTCATGGATTGGCGTATCTCCATTATGATTGTGATCCTCCCATAATACACCGAGACATCAAACCGCATAATATACTTCTAGATTCGGAGATGGAACCTCATATCGCTGATTTTGGTCTTGCAAGGCTGTTGGATCAAACATCTGAATCAGCAACTTCATCATCTTTTGTGGGTACAATTGGCTACGTTGCACCAGAGAATGCATTTTCAGCAGCAAGGAGCAAAGCCTCAGACGTGTACAGCTATGGGGTGGTTTTACTCGAGCTGATAACCGGAAAGAAGCCATCAGATCCATCATTTACGGAGGTCGGAAATATGATGGCTTGGGTTCGATCGGTTTGGAATGAGACAGGTGAAATAGATAGAATTGTTGATTCAAGACTTGTGGAAGAACTTAGTAATTTTGATCATAGGGAGCAGATGAAGCAGGTGCTTCTTGTGGCTTTGCGATGCACAGAAAAGGAGCCTAACAGGAGACCGAGAATGAGAGATATTGTGGACCACTTGATTGATTCAAAGACGAGCCATTACAGCAAGCATGGCTAA 3327 40.85 MQLLPRHFFLLVCFSFPISVVFGLTSDGLALLSLQTRWTTQTAFVPVWNASDSTPCSWAGIECDQNLLVLTLNLSYYGVTGQLGPEIARLTHLRTIDLNTNGFSGEIPYGIANCSHLEFLDLSLNQFGGEIPQSLTLLRNLTFLNFHDNVLTGAIPDSLFQSLNLQYVYLSENNLNGSIPPNVGNLRQLIHLYLYGNQLSGTIPSSIGNCSQLEDLYLDQNQLVGILPNSLNNLDNLVNLGVSHNNLEGPIPLGSGSCQSLEFIDLSFNGYTGGIPAGLGNCSRLTTLIIVNSSLTGHIPSSFGQLSNLSHLDLSRNQLSGNIPPEFGACKSLKELDLYVNQLEGGIPSELGLISGLETLQLFSNRLTGEIPISIWKIASLQHILVYDNNLSGELPSIITELKHLKNISVFDNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLKVLNLGLNQFQGNIPSDIGSCLTLQRLILQRNNLTGILPQFMRNHSLSYIDANENNLNGTVPSSLGNCTLLTSINLSNNKLTGHIPNELGNLVNLQSLKLSHNFLEGPLPSSLSNCTKMNTFDVGFNLLNGSIPHSLASWKVISTLILKENGFTGGLPNVLSELQSLLLLDLGGNLFGGEIPSNIGDLQNLFYSLNLSNNGLTGQLPSELASLIKLEGLDLSHNNLTGSLSVLGELSSSLMDLDISDNFFTGPVPQTLMKLLKSHPSSFFGNPGLCISCDELDGLSCNRNISISPCATHSSSRGSSRLGKVQIAIIALGSSLFIILLLLGLVYKFVCSRRNKQNIETAAQGGTTSLLEKVMEATDNLDERFIIGRGAHGVVYKASLNSNKIFAVKKLTFIERKGGSRNMVKEIRTVNNIKHRNLISLEDYWLGKDHGLLLYKYYPNGSLYDVLHGMNPAPALTWKARYNIAIGIAHGLAYLHYDCDPPIIHRDIKPHNILLDSEMEPHIADFGLARLLDQTSESATSSSFVGTIGYVAPENAFSAARSKASDVYSYGVVLLELITGKKPSDPSFTEVGNMMAWVRSVWNETGEIDRIVDSRLVEELSNFDHREQMKQVLLVALRCTEKEPNRRPRMRDIVDHLIDSKTSHYSKHG 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28967337 28970763 - ClG42_07g0141800.10 Clacu07g1418 254016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1418 1108 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524(InterPro)
Clacu07g1418 1108 PRINTS Leucine-rich repeat signature 309 322 - -
Clacu07g1418 1108 PRINTS Leucine-rich repeat signature 666 679 - -
Clacu07g1418 1108 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
Clacu07g1418 1108 SMART LRR_typ_2 90 114 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 306 330 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 211 233 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 186 210 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 138 162 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 617 641 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 545 569 IPR003591 -
Clacu07g1418 1108 SMART LRR_typ_2 666 689 IPR003591 -
Clacu07g1418 1108 FunFam Leucine-rich repeat receptor protein kinase EMS1 253 328 - -
Clacu07g1418 1108 ProSiteProfiles Protein kinase domain profile. 820 1098 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1418 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1418 1108 SMART serkin_6 820 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1418 1108 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 329 423 - -
Clacu07g1418 1108 Gene3D Ribonuclease Inhibitor 355 495 IPR032675 -
Clacu07g1418 1108 Pfam Leucine Rich Repeat 668 683 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 116 136 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Gene3D Ribonuclease Inhibitor 187 354 IPR032675 -
Clacu07g1418 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 341 1096 - -
Clacu07g1418 1108 FunFam Leucine-rich receptor-like protein kinase family protein 155 252 - -
Clacu07g1418 1108 Gene3D Transferase(Phosphotransferase) domain 1 897 1107 - -
Clacu07g1418 1108 Gene3D Phosphorylase Kinase; domain 1 785 896 - -
Clacu07g1418 1108 Pfam Protein kinase domain 825 1095 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1418 1108 SUPERFAMILY Protein kinase-like (PK-like) 803 1096 IPR011009 -
Clacu07g1418 1108 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Clacu07g1418 1108 Gene3D Ribonuclease Inhibitor 496 592 IPR032675 -
Clacu07g1418 1108 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 896 - -
Clacu07g1418 1108 SUPERFAMILY RNI-like 335 700 - -
Clacu07g1418 1108 SUPERFAMILY RNI-like 72 423 - -
Clacu07g1418 1108 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Clacu07g1418 1108 Gene3D Ribonuclease Inhibitor 593 735 IPR032675 -
Clacu07g1418 1108 FunFam Leucine-rich repeat receptor-like kinase 28 140 - -
Clacu07g1418 1108 FunFam Serine/threonine-protein kinase-like protein CCR4 897 1108 - -
Clacu07g1418 1108 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Clacu07g1418 1108 Pfam Leucine rich repeat 283 343 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1418 Clacu-Chr7:28967337 Clacu07g1681 Clacu-Chr7:31561664 1.40E-59 dispersed
Clacu07g1418 Clacu-Chr7:28967337 Clacu07g1420 Clacu-Chr7:28978388 5.40E-36 proximal
Clacu07g1417 Clacu-Chr7:28959860 Clacu07g1418 Clacu-Chr7:28967337 5.00E-33 tandem
Clacu07g1418 Clacu-Chr7:28967337 Clacu07g1419 Clacu-Chr7:28977246 1.30E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73713 PF00069 Pkinase 1.70E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1418 K28089 - csv:101204561 1785.77