Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu07g1423 | ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTCGCTGCTGTGGAACTTCGCTATATTGCCTTCGCTTCCCATCAGCCACCCCAACTCGACTTCTTCTTCGCTTGATCTATAATTTTGGTGAAGTCGAGAATCTTATTTCCAAGAACTTTCCTTCTGGCTGGCCTTTGCCGGCTGTGCTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAACTTCATCTCCAATCTGGTAAATTCTCCCTCGCTCTTTTTGTTGGTAGGATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGACGAAGAACTTCCGTTGAAGTCATCACCAGTCGCGAAGAACGTATTGCATAGCTTTGATTGTGAGACGGCTCCTGTACGTTCTTCCCCAGATGATACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGCTTCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACTTTTGGAAATGCAACCGAAATGATTATTTCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCAAATATGCTTCTTGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCGGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTCCCGGCGGTGCTTCATTTCACCCACACAGAACTTCATTCCGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCCCTTGATGAGGAAGTTGGTGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTATTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGGGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAAACAGCAACTTTGTTTATCACTGTGCTGGTGGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTCTATGTTACCTCATAGTGGCAGCCAGTTTTTTTGTACACGTTGACCCTAGTAATGATGATGATTAA | 1563 | 42.16 | MGKTQEDDISQKLPRCCGTSLYCLRFPSATPTRLLLRLIYNFGEVENLISKNFPSGWPLPAVLGFDLDILVASVQLHLQSGKFSLALFVGRMGSTEEKTNYLSDEELPLKSSPVAKNVLHSFDCETAPVRSSPDDTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVGDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDDD | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 28997858 | 29003301 | + | ClG42_07g0142300.10 | Clacu07g1423 | 254021 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu07g1423 | 520 | FunFam | Vacuolar cation/proton exchanger | 355 | 511 | - | - | |
| Clacu07g1423 | 520 | FunFam | Vacuolar cation/proton exchanger | 212 | 351 | - | - | |
| Clacu07g1423 | 520 | Gene3D | - | 212 | 511 | IPR044880 | - | |
| Clacu07g1423 | 520 | Pfam | Sodium/calcium exchanger protein | 183 | 338 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu07g1423 | 520 | Pfam | Sodium/calcium exchanger protein | 367 | 509 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu07g1423 | 520 | NCBIfam | calcium/proton exchanger | 164 | 510 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
| Clacu07g1423 | 520 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 126 | 515 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu07g1423 | Clacu-Chr7:28997858 | Clacu10g0399 | Clacu-Chr10:5040621 | 1.10E-152 | dispersed | |
| Clacu07g1423 | Clacu-Chr7:28997858 | Clacu04g0759 | Clacu-Chr4:21896479 | 1.10E-91 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu07g1423 | K07300 | - | csv:101219432 | 811.601 |