Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1423 ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTCGCTGCTGTGGAACTTCGCTATATTGCCTTCGCTTCCCATCAGCCACCCCAACTCGACTTCTTCTTCGCTTGATCTATAATTTTGGTGAAGTCGAGAATCTTATTTCCAAGAACTTTCCTTCTGGCTGGCCTTTGCCGGCTGTGCTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAACTTCATCTCCAATCTGGTAAATTCTCCCTCGCTCTTTTTGTTGGTAGGATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGACGAAGAACTTCCGTTGAAGTCATCACCAGTCGCGAAGAACGTATTGCATAGCTTTGATTGTGAGACGGCTCCTGTACGTTCTTCCCCAGATGATACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGCTTCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACTTTTGGAAATGCAACCGAAATGATTATTTCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCAAATATGCTTCTTGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCGGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTCCCGGCGGTGCTTCATTTCACCCACACAGAACTTCATTCCGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCCCTTGATGAGGAAGTTGGTGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTATTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGGGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAAACAGCAACTTTGTTTATCACTGTGCTGGTGGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTCTATGTTACCTCATAGTGGCAGCCAGTTTTTTTGTACACGTTGACCCTAGTAATGATGATGATTAA 1563 42.16 MGKTQEDDISQKLPRCCGTSLYCLRFPSATPTRLLLRLIYNFGEVENLISKNFPSGWPLPAVLGFDLDILVASVQLHLQSGKFSLALFVGRMGSTEEKTNYLSDEELPLKSSPVAKNVLHSFDCETAPVRSSPDDTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVGDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDDD 520
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 28997858 29003301 + ClG42_07g0142300.10 Clacu07g1423 254021
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1423 520 FunFam Vacuolar cation/proton exchanger 355 511 - -
Clacu07g1423 520 FunFam Vacuolar cation/proton exchanger 212 351 - -
Clacu07g1423 520 Gene3D - 212 511 IPR044880 -
Clacu07g1423 520 Pfam Sodium/calcium exchanger protein 183 338 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1423 520 Pfam Sodium/calcium exchanger protein 367 509 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu07g1423 520 NCBIfam calcium/proton exchanger 164 510 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu07g1423 520 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 126 515 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1423 Clacu-Chr7:28997858 Clacu10g0399 Clacu-Chr10:5040621 1.10E-152 dispersed
Clacu07g1423 Clacu-Chr7:28997858 Clacu04g0759 Clacu-Chr4:21896479 1.10E-91 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1423 K07300 - csv:101219432 811.601