Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu07g1427 | ATGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGGTCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGGTCGGTACCTGACTTTTTTTCTATTTTGTTTCTCTGCTTAGTTCTCCTTCCATTCGAAGTTCCTTCTCTTACATTAGCTTTCAGGCACTTCTTTTCTTCTTCGTCTGTTCTCAGTTCTTCAATGTCTGCTCTGTATAGTGGAAAGCAACTTGGGATCTCATCATATGAAGAACTTTCTTCCTCCGGTGCTATGAGCTTCTTTAAGAACGTCGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGTTTTTCCAAAGCTTTCGAGTATTTTTCCCCTGTACGTGTTTAGCTTCTGCAAATTGGAACTGACTGGACACTCTCTCCATGAAAGGGCTTGTGCTCTTTCCCACTTTGCTGCTGTTAAGAATTTGTTTCTTATTTTCACGAACATCCTCAAATACGAGGCCACATCTTTCCACACCTTTATGCTCTTTCTTCTGAATTCTGATGCCCACAAGCCCAGACCTCAATTATGGATGAAAGAGCTCTCAACCTGGAACCTCAGCTTTAAAGGAACGTCAAGAAAGAGGAATATATGGATTGGCTCTCCCTCATGGGTCAGATTGAAGCATGTTCCCCAACCAATTGCCTGTTTTCATGGACATGGCCTATGGACCCTTCCGGCTCTTTCACTTGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGGAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA | 2772 | 43.47 | MELGRAVAASQYLHFGMEGQFYQWSYGSRRWSVPDFFSILFLCLVLLPFEVPSLTLAFRHFFSSSSVLSSSMSALYSGKQLGISSYEELSSSGAMSFFKNVVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQVFPKLSSIFPLYVFSFCKLELTGHSLHERACALSHFAAVKNLFLIFTNILKYEATSFHTFMLFLLNSDAHKPRPQLWMKELSTWNLSFKGTSRKRNIWIGSPSWVRLKHVPQPIACFHGHGLWTLPALSLDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS | 923 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29013938 | 29020229 | + | ClG42_07g0142700.10 | Clacu07g1427 | 254025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu07g1427 | 923 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 696 | 904 | - | - | |
Clacu07g1427 | 923 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 99 | 324 | - | - | |
Clacu07g1427 | 923 | Pfam | Protein tyrosine and serine/threonine kinase | 620 | 890 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu07g1427 | 923 | SUPERFAMILY | L domain-like | 102 | 303 | - | - | |
Clacu07g1427 | 923 | Pfam | Leucine rich repeat N-terminal domain | 103 | 138 | IPR013210 | - | |
Clacu07g1427 | 923 | MobiDBLite | consensus disorder prediction | 908 | 923 | - | - | |
Clacu07g1427 | 923 | CDD | STKc_IRAK | 624 | 893 | - | - | |
Clacu07g1427 | 923 | Gene3D | Phosphorylase Kinase; domain 1 | 579 | 695 | - | - | |
Clacu07g1427 | 923 | SMART | LRR_typ_2 | 164 | 188 | IPR003591 | - | |
Clacu07g1427 | 923 | SMART | LRR_typ_2 | 210 | 233 | IPR003591 | - | |
Clacu07g1427 | 923 | SMART | LRR_typ_2 | 234 | 257 | IPR003591 | - | |
Clacu07g1427 | 923 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 582 | 695 | - | - | |
Clacu07g1427 | 923 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 365 | 892 | IPR051420 | - | |
Clacu07g1427 | 923 | MobiDBLite | consensus disorder prediction | 901 | 923 | - | - | |
Clacu07g1427 | 923 | ProSiteProfiles | Protein kinase domain profile. | 618 | 893 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu07g1427 | 923 | Pfam | Leucine rich repeat | 188 | 245 | IPR001611 | GO:0005515(InterPro) | |
Clacu07g1427 | 923 | SUPERFAMILY | Protein kinase-like (PK-like) | 598 | 890 | IPR011009 | - | |
Clacu07g1427 | 923 | MobiDBLite | consensus disorder prediction | 316 | 335 | - | - | |
Clacu07g1427 | 923 | Gene3D | Ribonuclease Inhibitor | 99 | 318 | IPR032675 | - | |
Clacu07g1427 | 923 | Gene3D | Transferase(Phosphotransferase) domain 1 | 697 | 913 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2355 | Clacu-Chr1:34302513 | Clacu07g1427 | Clacu-Chr7:29013938 | 4.70E-97 | dispersed | |
Clacu07g1427 | Clacu-Chr7:29013938 | Clacu10g1722 | Clacu-Chr10:30744889 | 1.10E-86 | dispersed | |
Clacu01g0988 | Clacu-Chr1:12894534 | Clacu07g1427 | Clacu-Chr7:29013938 | 1.20E-133 | transposed | |
Clacu08g0628 | Clacu-Chr8:14696926 | Clacu07g1427 | Clacu-Chr7:29013938 | 5.50E-150 | transposed | |
Clacu03g1551 | Clacu-Chr3:29089308 | Clacu07g1427 | Clacu-Chr7:29013938 | 1.60E-48 | wgd | |
Clacu07g1427 | Clacu-Chr7:29013938 | Clacu09g0150 | Clacu-Chr9:1426123 | 9.60E-187 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73716 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-40 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu07g1427 | - | - | - | 0.0 |