Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1427 ATGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGGTCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGGTCGGTACCTGACTTTTTTTCTATTTTGTTTCTCTGCTTAGTTCTCCTTCCATTCGAAGTTCCTTCTCTTACATTAGCTTTCAGGCACTTCTTTTCTTCTTCGTCTGTTCTCAGTTCTTCAATGTCTGCTCTGTATAGTGGAAAGCAACTTGGGATCTCATCATATGAAGAACTTTCTTCCTCCGGTGCTATGAGCTTCTTTAAGAACGTCGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGTTTTTCCAAAGCTTTCGAGTATTTTTCCCCTGTACGTGTTTAGCTTCTGCAAATTGGAACTGACTGGACACTCTCTCCATGAAAGGGCTTGTGCTCTTTCCCACTTTGCTGCTGTTAAGAATTTGTTTCTTATTTTCACGAACATCCTCAAATACGAGGCCACATCTTTCCACACCTTTATGCTCTTTCTTCTGAATTCTGATGCCCACAAGCCCAGACCTCAATTATGGATGAAAGAGCTCTCAACCTGGAACCTCAGCTTTAAAGGAACGTCAAGAAAGAGGAATATATGGATTGGCTCTCCCTCATGGGTCAGATTGAAGCATGTTCCCCAACCAATTGCCTGTTTTCATGGACATGGCCTATGGACCCTTCCGGCTCTTTCACTTGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGGAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2772 43.47 MELGRAVAASQYLHFGMEGQFYQWSYGSRRWSVPDFFSILFLCLVLLPFEVPSLTLAFRHFFSSSSVLSSSMSALYSGKQLGISSYEELSSSGAMSFFKNVVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQVFPKLSSIFPLYVFSFCKLELTGHSLHERACALSHFAAVKNLFLIFTNILKYEATSFHTFMLFLLNSDAHKPRPQLWMKELSTWNLSFKGTSRKRNIWIGSPSWVRLKHVPQPIACFHGHGLWTLPALSLDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29013938 29020229 + ClG42_07g0142700.10 Clacu07g1427 254025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1427 923 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 696 904 - -
Clacu07g1427 923 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 99 324 - -
Clacu07g1427 923 Pfam Protein tyrosine and serine/threonine kinase 620 890 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1427 923 SUPERFAMILY L domain-like 102 303 - -
Clacu07g1427 923 Pfam Leucine rich repeat N-terminal domain 103 138 IPR013210 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 908 923 - -
Clacu07g1427 923 CDD STKc_IRAK 624 893 - -
Clacu07g1427 923 Gene3D Phosphorylase Kinase; domain 1 579 695 - -
Clacu07g1427 923 SMART LRR_typ_2 164 188 IPR003591 -
Clacu07g1427 923 SMART LRR_typ_2 210 233 IPR003591 -
Clacu07g1427 923 SMART LRR_typ_2 234 257 IPR003591 -
Clacu07g1427 923 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 582 695 - -
Clacu07g1427 923 PANTHER LEUCINE RICH REPEAT KINASE 2 365 892 IPR051420 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 901 923 - -
Clacu07g1427 923 ProSiteProfiles Protein kinase domain profile. 618 893 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1427 923 Pfam Leucine rich repeat 188 245 IPR001611 GO:0005515(InterPro)
Clacu07g1427 923 SUPERFAMILY Protein kinase-like (PK-like) 598 890 IPR011009 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 316 335 - -
Clacu07g1427 923 Gene3D Ribonuclease Inhibitor 99 318 IPR032675 -
Clacu07g1427 923 Gene3D Transferase(Phosphotransferase) domain 1 697 913 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2355 Clacu-Chr1:34302513 Clacu07g1427 Clacu-Chr7:29013938 4.70E-97 dispersed
Clacu07g1427 Clacu-Chr7:29013938 Clacu10g1722 Clacu-Chr10:30744889 1.10E-86 dispersed
Clacu01g0988 Clacu-Chr1:12894534 Clacu07g1427 Clacu-Chr7:29013938 1.20E-133 transposed
Clacu08g0628 Clacu-Chr8:14696926 Clacu07g1427 Clacu-Chr7:29013938 5.50E-150 transposed
Clacu03g1551 Clacu-Chr3:29089308 Clacu07g1427 Clacu-Chr7:29013938 1.60E-48 wgd
Clacu07g1427 Clacu-Chr7:29013938 Clacu09g0150 Clacu-Chr9:1426123 9.60E-187 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu01g0988 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.3e-84 311.2
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu09g0150 . 109 803 Strubbelig Receptor Gene Family AT1G53730 61.1 1.7e-183 639.8
Clacu07g1427 . 103 916 Strubbelig Receptor Gene Family AT1G53730 51.0 3.2e-182 635.6
Clacu08g0628 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Clacu01g0988 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.4e-147 518.8
Clacu09g0150 . 109 793 Strubbelig Receptor Gene Family AT3G14350 55.5 2.2e-164 576.2
Clacu01g0988 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Clacu07g1427 . 595 923 Strubbelig Receptor Gene Family AT4G22130 63.4 4.7e-120 428.7
Clacu09g0150 . 482 795 Strubbelig Receptor Gene Family AT4G22130 64.6 6.4e-117 418.3
Clacu02g0132 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Clacu08g0628 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Clacu10g1722 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.2e-92 334.7
Clacu01g2355 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73716 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Clacu PK