Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1427 ATGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGGTCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGGTCGGTACCTGACTTTTTTTCTATTTTGTTTCTCTGCTTAGTTCTCCTTCCATTCGAAGTTCCTTCTCTTACATTAGCTTTCAGGCACTTCTTTTCTTCTTCGTCTGTTCTCAGTTCTTCAATGTCTGCTCTGTATAGTGGAAAGCAACTTGGGATCTCATCATATGAAGAACTTTCTTCCTCCGGTGCTATGAGCTTCTTTAAGAACGTCGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGTTTTTCCAAAGCTTTCGAGTATTTTTCCCCTGTACGTGTTTAGCTTCTGCAAATTGGAACTGACTGGACACTCTCTCCATGAAAGGGCTTGTGCTCTTTCCCACTTTGCTGCTGTTAAGAATTTGTTTCTTATTTTCACGAACATCCTCAAATACGAGGCCACATCTTTCCACACCTTTATGCTCTTTCTTCTGAATTCTGATGCCCACAAGCCCAGACCTCAATTATGGATGAAAGAGCTCTCAACCTGGAACCTCAGCTTTAAAGGAACGTCAAGAAAGAGGAATATATGGATTGGCTCTCCCTCATGGGTCAGATTGAAGCATGTTCCCCAACCAATTGCCTGTTTTCATGGACATGGCCTATGGACCCTTCCGGCTCTTTCACTTGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGGAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2772 43.47 MELGRAVAASQYLHFGMEGQFYQWSYGSRRWSVPDFFSILFLCLVLLPFEVPSLTLAFRHFFSSSSVLSSSMSALYSGKQLGISSYEELSSSGAMSFFKNVVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQVFPKLSSIFPLYVFSFCKLELTGHSLHERACALSHFAAVKNLFLIFTNILKYEATSFHTFMLFLLNSDAHKPRPQLWMKELSTWNLSFKGTSRKRNIWIGSPSWVRLKHVPQPIACFHGHGLWTLPALSLDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29013938 29020229 + ClG42_07g0142700.10 Clacu07g1427 254025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1427 923 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 696 904 - -
Clacu07g1427 923 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 99 324 - -
Clacu07g1427 923 Pfam Protein tyrosine and serine/threonine kinase 620 890 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1427 923 SUPERFAMILY L domain-like 102 303 - -
Clacu07g1427 923 Pfam Leucine rich repeat N-terminal domain 103 138 IPR013210 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 908 923 - -
Clacu07g1427 923 CDD STKc_IRAK 624 893 - -
Clacu07g1427 923 Gene3D Phosphorylase Kinase; domain 1 579 695 - -
Clacu07g1427 923 SMART LRR_typ_2 164 188 IPR003591 -
Clacu07g1427 923 SMART LRR_typ_2 210 233 IPR003591 -
Clacu07g1427 923 SMART LRR_typ_2 234 257 IPR003591 -
Clacu07g1427 923 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 582 695 - -
Clacu07g1427 923 PANTHER LEUCINE RICH REPEAT KINASE 2 365 892 IPR051420 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 901 923 - -
Clacu07g1427 923 ProSiteProfiles Protein kinase domain profile. 618 893 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1427 923 Pfam Leucine rich repeat 188 245 IPR001611 GO:0005515(InterPro)
Clacu07g1427 923 SUPERFAMILY Protein kinase-like (PK-like) 598 890 IPR011009 -
Clacu07g1427 923 MobiDBLite consensus disorder prediction 316 335 - -
Clacu07g1427 923 Gene3D Ribonuclease Inhibitor 99 318 IPR032675 -
Clacu07g1427 923 Gene3D Transferase(Phosphotransferase) domain 1 697 913 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2355 Clacu-Chr1:34302513 Clacu07g1427 Clacu-Chr7:29013938 4.70E-97 dispersed
Clacu07g1427 Clacu-Chr7:29013938 Clacu10g1722 Clacu-Chr10:30744889 1.10E-86 dispersed
Clacu01g0988 Clacu-Chr1:12894534 Clacu07g1427 Clacu-Chr7:29013938 1.20E-133 transposed
Clacu08g0628 Clacu-Chr8:14696926 Clacu07g1427 Clacu-Chr7:29013938 5.50E-150 transposed
Clacu03g1551 Clacu-Chr3:29089308 Clacu07g1427 Clacu-Chr7:29013938 1.60E-48 wgd
Clacu07g1427 Clacu-Chr7:29013938 Clacu09g0150 Clacu-Chr9:1426123 9.60E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73716 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1427 - - - 0.0