Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1434 ATGGCACAAACCGACGACTGCGCCGTCACCGGATTTTTGTTCTCCGGCAGCCCCATTTCCATTTCCAACATAAAAATCAAGCTGTTGGTGTTAGCCGTGTGGGCTGCGCTTGTCCTGACGGGCGTCTCCTCCGACGAGCACGTGAGAAGCACGTGCGCCATGACGCTTTACCCGGAGCTTTGCGAGACGACGATATCGAGCGGAGTGGGAAGTAAGAGTTCAAAAGAGGCAATCGAATCGTCGGTGAATATTACGATTGGCGCAGTGAAGGATAACTATAAAAGGATCAAGAAATTGGTTAAGACAGGAAAGAATCTGAGAAAGCGAGAGAAGATTGCTCTCAATGACTGTCTAGAAACAGGGGAGGAGACGCTGAGAGAGCTGTATGAGGTTGTTGATGATCTCCATGAATATCCTAATAAGAAATCTCTCTCACAATACGCCGATGACCTCAAAACCTTCCTCAGTTCCGCCATTACGAATCAGGAGACATGCGTGGACGGATTCTCGCACGACAAAGCCGACAAGAAGGTACGAGAGTCATTAGAAGCAGGCCTAATTCACGTCGAAAAGCTTTGTAGCGTTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACGACAACCTCATCAATAGAAACCAGCTCACGGAGATCAACAATGGACGCGACCACGACGGAATTAACTGGCCCCATTGGATGTCGCCTGGCGACCGAAGGCTTTTGCAGGCGTCGTCCACCGCCACTCCCGATGTGGTAGTGGCAGCCGATGGAAGTGGCAATTTCCGAACGGTGTCGGAGGCGGTTGCGGCGGCGCCGAATAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACCGGGAACAGAAATGTCGTCGATGGCAGTACCACCTTCAACTCCGCCACCGTCGCGGCAGTGGGAGAAAGGTTCTTGGCGAGAGACATTACGTTTCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCTTATCAAGACACACTCTACGTCCACTCCAACCGCCAATTCTACGTCAAATGCATAATCATTGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTGCGACATCCACGCTCGCCGCCCCAATCCCGGGCAGAGGAACATGGTGACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGTCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGTAATTTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGCATTAGCAATGTGATCGATCCGGCAGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTACGCCGAGTATCAGAATAGCGGGCCCGGTGCTGATACGTCAAGGAGAGTAACGTGGAAGGGGTATAGGGTTCTTACAAGTGCGGCGGAAGCTGCGGCCTTCACGGCAGGGAATTTCATCGGCGGCGGCACCTGGCTGAGATCCACTGGATTCCCATTTTCACTTGGGCTGTAA 1704 51.76 MAQTDDCAVTGFLFSGSPISISNIKIKLLVLAVWAALVLTGVSSDEHVRSTCAMTLYPELCETTISSGVGSKSSKEAIESSVNITIGAVKDNYKRIKKLVKTGKNLRKREKIALNDCLETGEETLRELYEVVDDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSVALALIKNLTDTDIANHNDNLINRNQLTEINNGRDHDGINWPHWMSPGDRRLLQASSTATPDVVVAADGSGNFRTVSEAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAAAFTAGNFIGGGTWLRSTGFPFSLGL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29053467 29056953 + ClG42_07g0143400.10 Clacu07g1434 254032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1434 567 FunFam Pectinesterase 44 204 - -
Clacu07g1434 567 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Clacu07g1434 567 CDD PMEI-like_3 50 204 - -
Clacu07g1434 567 NCBIfam pectinesterase inhibitor domain 31 204 IPR006501 GO:0004857(InterPro)
Clacu07g1434 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Clacu07g1434 567 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Clacu07g1434 567 PANTHER PECTINESTERASE 28 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu07g1434 567 Gene3D - 250 567 IPR012334 -
Clacu07g1434 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Clacu07g1434 567 SMART PMEI_2 43 199 IPR006501 GO:0004857(InterPro)
Clacu07g1434 567 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857(InterPro)
Clacu07g1434 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Clacu07g1434 567 FunFam Pectinesterase 250 567 - -
Clacu07g1434 567 Pfam Pectinesterase 256 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1434 Clacu-Chr7:29053467 Clacu09g0555 Clacu-Chr9:4738639 2.70E-131 dispersed
Clacu07g1434 Clacu-Chr7:29053467 Clacu07g1435 Clacu-Chr7:29062007 5.40E-100 tandem
Clacu09g0865 Clacu-Chr9:8047339 Clacu07g1434 Clacu-Chr7:29053467 1.60E-179 transposed
Clacu07g1434 Clacu-Chr7:29053467 Clacu09g0146 Clacu-Chr9:1364958 1.40E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1434 K01051 - csv:101207996 934.48