Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1435 ATGGATACCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGCCAAAAGACTCGTCGCCGGCTAATCATACTCCTTCTTTCCATTCTTCTTCTAATTGCTCTCGTCATCGGCGCCGTCGTCGGAATTGTCATTCATAAACGAAACTCTTCTTCTTCATCGCCCACCAGCTCAGCTCCTCCCACCGAGCTCACTCCCGCTGCCTCACTCAAAACTCTCTGTAGTGTTACTCAGTATCCCAGTTCCTGTCAGTCCTCTCTCCAAAACTCCAACACTACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTTGCCACCGATTCCCTCTCGAAACTTTCCGATTATACCTCTACTCTCAATTCCAATACTGGAGATCCGAAGGTTAAAGCCGCCATTGAAATCTGCCGGAGTGTTTTTGAAGATGCCATTGACACGCTAAACGACACCGTTTCATCCATGGAAGTGGATCACCATAGTGAGAAGTTCTTGTCGCCGTCTAGGATTGAAGATCTGAAAACCTGGCTGAGCACTACAATCACAGATCAAGAAACCTGCCTCGACGCAGTTCGAGATCTAAACCAGACGACGCTTCTCCAAAACTTGCAAACGGCAATGGCGAACTCTACTGAGTTTACTAGCAATAGTTTAGCGATTGTAACGAAAATCCTTGGACTGTTGGCTGATTTCAACATCCCTATCCACCGGAAGCTGATGGGACTCCCGGAGTGGTTAAGCTCCGGCGATCGAAGGCTTCTGCAGGAGAACAATGTGACGGCGCATATGACGGTGTCGAAGGATGGGAAAGGGCACTACACAACGATCAAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAACAAGTGGAACGTTATGATGTATGGAGATGGCAGAACCAAAACCATTGTTTCGGGCCACCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCCGGTCCAGCCAAGCACCAGGCTGTTGCCTTCCGGTCAGGCTCCGACCTTTCTGTGATGTCCGGATGTTCATTTGATGGCTATCAAGACACACTCTACGCCCACTCAAACCGTCAATTCTACCGAGACTGCGACATCACTGGCACCATCGACTTCATGTTCGGCAACGCCGCCGTGGTGTTCCAGAACTGCAACATCCGGCCGAGGCAGCCACTTCCCAACCAGTTTAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGACAGTCTAACCGCCCCCACTTACCTGGGTCGGCCATGGAAGGAGTTTTCCACCACGGTGATTATGCAGTCGGACATCGGAGCATTCCTGCAGCCCGTGGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGGGAGTATCAGAATACTGGGCCTGGATCCAGCGTGGACAAGAGGGTTAGATGGGCCGGTTACAGGCCCAGTCTTACGGACGCCGAGGCCGGAAAGTTCACTGTCAGGACCTTCCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAGTTTGATACATCCTTGTGA 1731 51.07 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIILLLSILLLIALVIGAVVGIVIHKRNSSSSSPTSSAPPTELTPAASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSTLNSNTGDPKVKAAIEICRSVFEDAIDTLNDTVSSMEVDHHSEKFLSPSRIEDLKTWLSTTITDQETCLDAVRDLNQTTLLQNLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWLSSGDRRLLQENNVTAHMTVSKDGKGHYTTIKDAVAAVPKKSKERFIIHVKEGIYEENVILDKNKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFMFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLTAPTYLGRPWKEFSTTVIMQSDIGAFLQPVGWKEWVSGQDPPSSIFYGEYQNTGPGSSVDKRVRWAGYRPSLTDAEAGKFTVRTFLNGEDWLPATSVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29062007 29064191 + ClG42_07g0143500.10 Clacu07g1435 254033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1435 576 Gene3D - 262 576 IPR012334 -
Clacu07g1435 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Clacu07g1435 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Clacu07g1435 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Clacu07g1435 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Clacu07g1435 576 FunFam Pectinesterase 262 576 - -
Clacu07g1435 576 FunFam Pectinesterase 74 231 - -
Clacu07g1435 576 NCBIfam pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857(InterPro)
Clacu07g1435 576 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
Clacu07g1435 576 CDD PMEI-like_3 79 230 - -
Clacu07g1435 576 Pfam Pectinesterase 269 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu07g1435 576 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0623 Clacu-Chr3:6520741 Clacu07g1435 Clacu-Chr7:29062007 3.20E-124 dispersed
Clacu04g1307 Clacu-Chr4:26998121 Clacu07g1435 Clacu-Chr7:29062007 2.40E-20 dispersed
Clacu06g0481 Clacu-Chr6:5595222 Clacu07g1435 Clacu-Chr7:29062007 5.60E-113 dispersed
Clacu07g1435 Clacu-Chr7:29062007 Clacu09g0146 Clacu-Chr9:1364958 8.50E-109 dispersed
Clacu07g1434 Clacu-Chr7:29053467 Clacu07g1435 Clacu-Chr7:29062007 5.40E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1435 - - - 0.0