Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1477 ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCAGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 789 41.83 MQLVPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29333541 29335301 - ClG42_07g0147700.10 Clacu07g1477 254075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1477 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270(InterPro)
Clacu07g1477 262 SUPERFAMILY RING/U-box 70 126 - -
Clacu07g1477 262 SMART ringv_2 74 123 IPR011016 GO:0008270(InterPro)
Clacu07g1477 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Clacu07g1477 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 194 262 - -
Clacu07g1477 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Clacu07g1477 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1154 Clacu-Chr6:21950169 Clacu07g1477 Clacu-Chr7:29333541 2.50E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1477 - - - 0.0