Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1485 ATGCCAACGGGCGTGCGCGTGGTGGGGCTTATGCGCGCACCGGCCCCAACCATCAGCGCCGCTTCTCTCATTCTCTTCTTTCTCCTCCTCCTCTCATCTTCATGCATAATGGTGGTGTTGTCGGCCTCAGACGCCGAAACACTGCTTCTATTCAAGCGGTCATTGACGTCAGCAGTGGCTCTTAACAACTGGAACCCATCGGTCCCTCCTTGCGAGAACAACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGACATGTTAGGGGTCTAAGGCTTGAGAATATGGGGCTTAAGGGAGAGGTTGATGTGAATTCGTTGGTTTCTATGACTCGCTTGAGGACACTGAGCTTCATGAACAACACATTGGTTGGGGGTTGGCCTCGTGTCATAAGCAAATTAGGGAGTCTACGTTCTGTTTATCTTTCCTATAACCATTTTTCAGGACAAATCCCAGACGATGCTTTTGCGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCCCATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCTCGATTTCAAATCGATACTTTGAAGAAACTTAATGTTTCCAACAATGAATTGGAGGGCCCAATTCCTAGTAGCTTATCCCATATGGATCCTTCCTGCTTTGCAGGTAACCGTGATCTGTGTGGGGATCCTCTACCAGCATGTGGGAGTGCGATATCATCCTCAGAGCTTCTAAAAATCGCAGTGATAGTGATAATTTTGGGGTTAACATTAGCAGTAATAGCTGCAATATTCATCATAATGAATTTAAGGAAGCAGCCAGCAGCGGTGCAACTGGGGAAGGGGAATCCAGGGATTATCATTGAAGAGGATCAGAACAAATACATGAATAATGGTAAGCAAATGACGGCGGGGGCGGGGGCGGGGGATGGATACAGATCGACGGAGTCGTCGGTGGCTCAGGCTCCGAAGAGAGGGGCAGAACACGGGAAACTGTTGTTCGTGAGAGATGATAGGGAGAAGTTCGATTTACAAGACCTGCTAAGAGCGTCGGCGGAGATATTGGGGAGTGGTTCATTCGGGTCTTCTTATAAAGCAACTATACTTTGTAATGCGGTGGTGGTGAAGCGTTACAAGCATATGAACAATGTGGGAAGAGAGGAGTTTCATGAGCATATGAGAAGGCTAGGTAGATTGACGCATGCAAATCTACTCCCTTTGGTTGCATATTATTACAGGAAGGAAGAGAAGCTCTTGATTTCCGACTTTGTGGATAATGGGAGTTTGGCCAGCCATCTGCATGGGAACCACAACCTGGAGGAGGCAGGGCTGGATTGGGCAACTAGATTGAAGATCATCAGAGGAATAGCAAGAGGGTTGTCTTACTTGTACACATCGCTGCCAAACATAGTAGCAGCACATGGGCATCTGAAATCTTCAAATGTGTTACTAGACGAGTCGATGGAGCCTCTGCTGACGGATTACGGTCTAAGCCCAGTAGCGAACCTAGAGCAGGGGCAGAGCCTGATGATGGCCTACAAATCCCCAGAGTACGCCCAAATGGGGCGCATAACCAAGAAAACGGACGTGTGGAGCTTCGGAATTGTGATTCTGGAGATGTTGACGGGTAGGTTCCCAGAGAATTACCTAACTCGGAATCACGACACCAAAGCTGACCTGGCGGGTTGGGTCAACAACATGATCAAGGAAAAGAAGACCCCGCAAGTGTTCGACGCAGAGCTAGGGCGAGCCAGGGAGAGCAATAAAGGCGAGTTGCTGAAGATGCTTAAGATTGCATTGAGTTGTTGCGAGGAAGATGTGGATAGAAGGTTGGATCTCAATCAAGTAGTCGCACAAATTGAAGACTTGAACGATGCAGATTTTAGTGATGATGATGGAGATAACTTCTCCCCCACTTCTCGCCATTCTCAAATTCCTGTTTGA 1983 47.6 MPTGVRVVGLMRAPAPTISAASLILFFLLLLSSSCIMVVLSASDAETLLLFKRSLTSAVALNNWNPSVPPCENNKANWAGVLCLNGHVRGLRLENMGLKGEVDVNSLVSMTRLRTLSFMNNTLVGGWPRVISKLGSLRSVYLSYNHFSGQIPDDAFAGMKFLKKVFLTNNEFNGPIPSSLASLSRLMELRLDGNKFKGQVPRFQIDTLKKLNVSNNELEGPIPSSLSHMDPSCFAGNRDLCGDPLPACGSAISSSELLKIAVIVIILGLTLAVIAAIFIIMNLRKQPAAVQLGKGNPGIIIEEDQNKYMNNGKQMTAGAGAGDGYRSTESSVAQAPKRGAEHGKLLFVRDDREKFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREEFHEHMRRLGRLTHANLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEAGLDWATRLKIIRGIARGLSYLYTSLPNIVAAHGHLKSSNVLLDESMEPLLTDYGLSPVANLEQGQSLMMAYKSPEYAQMGRITKKTDVWSFGIVILEMLTGRFPENYLTRNHDTKADLAGWVNNMIKEKKTPQVFDAELGRARESNKGELLKMLKIALSCCEEDVDRRLDLNQVVAQIEDLNDADFSDDDGDNFSPTSRHSQIPV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29434394 29438139 - ClG42_07g0148500.10 Clacu07g1485 254083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1485 660 FunFam Pollen receptor-like kinase 1 437 647 - -
Clacu07g1485 660 Pfam Protein tyrosine and serine/threonine kinase 366 632 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1485 660 Gene3D Phosphorylase Kinase; domain 1 328 436 - -
Clacu07g1485 660 Gene3D Ribonuclease Inhibitor 43 156 IPR032675 -
Clacu07g1485 660 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Clacu07g1485 660 SUPERFAMILY Protein kinase-like (PK-like) 366 635 IPR011009 -
Clacu07g1485 660 SUPERFAMILY L domain-like 68 230 - -
Clacu07g1485 660 MobiDBLite consensus disorder prediction 638 660 - -
Clacu07g1485 660 Gene3D Transferase(Phosphotransferase) domain 1 437 650 - -
Clacu07g1485 660 FunFam pollen receptor-like kinase 1 331 436 - -
Clacu07g1485 660 ProSiteProfiles Protein kinase domain profile. 362 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1485 660 Pfam Leucine rich repeat N-terminal domain 42 83 IPR013210 -
Clacu07g1485 660 Gene3D Ribonuclease Inhibitor 157 249 IPR032675 -
Clacu07g1485 660 Pfam Leucine Rich Repeat 136 154 IPR001611 GO:0005515(InterPro)
Clacu07g1485 660 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515(InterPro)
Clacu07g1485 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 39 637 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1513 Clacu-Chr6:26040511 Clacu07g1485 Clacu-Chr7:29434394 2.60E-122 dispersed
Clacu07g1485 Clacu-Chr7:29434394 Clacu08g1408 Clacu-Chr8:24163960 1.10E-107 dispersed
Clacu01g0206 Clacu-Chr1:2017868 Clacu07g1485 Clacu-Chr7:29434394 1.90E-50 wgd
Clacu05g1017 Clacu-Chr5:8995384 Clacu07g1485 Clacu-Chr7:29434394 1.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73717 PF07714 PK_Tyr_Ser-Thr 2.00E-30 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1485 K28077 - csv:101203276 1109.36