Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1489 ATGGATTCTTCAATTTCCTCATTCCTTCTGTTCTTTTCCTTTTCCCTTCTCTTCATATTTGGTAATTCCTTCGATTTCTACAGCTCCTGCAGCAATCTCTTCAACTGCGGCCACATCACCAACGTCGGCTTCCCATTCTGGGGCGACGGAAGGCCTGCCGGCTGCGGCAATCCGGCCCTGCAATTGGCATGCGATGGAAATAAGACAACGATCGTAATAAAGGAAATCAAATATCAGATTCTCAAATTCAGCGTCGAAAATAATTCCCAAACGCTCACCATCGCCAGAGCCGATTATATGGGTACCCTCTGCCCTAAGAAATTCATCAACACCACAATCGATTACAATCTCTTCGATATAATTCCTACTTACCGCAACATCACCTTGCTATATTGCTCCTCTTCTCCTCTCGCCGGGCAATTTAACTGTCCTGGATATGAGTTCGGCTTCATTGAGGGGAGCCCCATAGGTCCTAGTCTCTGCAATGTTAGCGTGATCGTGCCGGTTTCTTTGAATTTCTTCCCGCCGGTAAGTGATATTGTGAACGCTACTGAGATGTCGATGGCCATCGACGAGGGATTTGAGGTGAGTTTGAAGGATGACGGCGGTGGATGTGGAATTTGTAAGCAGTCGGAGGGGGTTTGCGGTTACGATTTGAGTTCGAATCGGACGACTTGCTATTGTCGCGCCGGCGATTCTATTGATAACGGAGCTTGTAGGAGGCTTCCGGCCGGTGGAGGTCCGGCATCTTCTCCGGGTGGGAATGGATCTAAGAATACATCCCTGATAATAGGCCTTTCTATTGGAGGAGTAACTGTACTAGGCCTATGCTTAGGATGCTTTGCCTTCTACATTACACAACGCAGAAAAAAACATGTTATGAAGTTGAAAAGCAAAGATCTTTCTTCACCTCCTTCAAGTGGAGGCATTCTGACTCCCTCCACCTTTCGCTCTAATAGTATTCCTTCCTATCCTTATTCGAGATCTAATCTCGAAAACGGGAGCTCCTACTTTGGAGCTCAAATCTTTACCTATGCCGAACTCGTGGAAGCAACTCATAATTTTGACCGTTCAAGGGAACTTGGAGATGGTGGTTATGGTACTGTTTACTCTGGAACACTTAGGGATGGAAGGATAGTTGCAGTAAAGCGGCTATACGAGAACAATTATAAACGCGTGGAGCAGTTCACAAATGAAGTTGAGATTCTCTCAAAATTGCAACATCCGAACCTCGTGAAGCTTTACGGATGCACATCGAGACATAGCCGAGAACTCCTCCTTGTATATGAGTACATTCCTAATGGAACAGTGGCTGACCATCTTCATGGAAAACAAGCAAATTCAGGTCTCCTTAGTTGGTCTGTTAGGCTCAAGATTGCTATAGAGACAGCTAATGCACTGGCTTACCTCCATCGCAACGATATCATTCATCGTGATGTCAAGACCAATAACATTCTTCTTGACAACAACTTCAAAGTAAAAGTGGCTGATTTCGGCCTGTCACGGTTATTTCCCCTCGACGTTACTCATGTTTCAACTGCTCCGCAAGGGACACCAGGCTATGTTGATCCCGAATATTATCAATGCTACCAACTTACCGACAAGAGCGACGTGTATAGCTTTGGAGTTGTTTTGGTTGAGCTCATATCGTCGCTGCAGGCAGTTGACATCAACAGGAACAGAAATGATATCAATTTGTCAAATATGGCTATTGATAGAATTCAAAATCATGCATTGGCTGATTTAGTTGATCTAGATCTTGGGTTTGATAGGGATTATGCAGTAAGGTGTATGATAAAGTCAGTGGCAGAGTTGGCTTACCGATGTCTTCAACAGACAAGGGATGTGAGGCCTTCTATGGATGAAGTGCTGGAAATTCTAAAAGAATTAGAGAATGAAGAACTGACTGCTCGTAAAGCAGAAGTGCTAGATATAGGGTCTGATAATGTGAGACTTTTAAGGAATACATCATCTCTGCTTTCACCAGATTCTGCACCAGTGACAGATAAATGGGTGAAGGTCTTGAACAGAACAACTTAA 2040 44.41 MDSSISSFLLFFSFSLLFIFGNSFDFYSSCSNLFNCGHITNVGFPFWGDGRPAGCGNPALQLACDGNKTTIVIKEIKYQILKFSVENNSQTLTIARADYMGTLCPKKFINTTIDYNLFDIIPTYRNITLLYCSSSPLAGQFNCPGYEFGFIEGSPIGPSLCNVSVIVPVSLNFFPPVSDIVNATEMSMAIDEGFEVSLKDDGGGCGICKQSEGVCGYDLSSNRTTCYCRAGDSIDNGACRRLPAGGGPASSPGGNGSKNTSLIIGLSIGGVTVLGLCLGCFAFYITQRRKKHVMKLKSKDLSSPPSSGGILTPSTFRSNSIPSYPYSRSNLENGSSYFGAQIFTYAELVEATHNFDRSRELGDGGYGTVYSGTLRDGRIVAVKRLYENNYKRVEQFTNEVEILSKLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGKQANSGLLSWSVRLKIAIETANALAYLHRNDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRNDINLSNMAIDRIQNHALADLVDLDLGFDRDYAVRCMIKSVAELAYRCLQQTRDVRPSMDEVLEILKELENEELTARKAEVLDIGSDNVRLLRNTSSLLSPDSAPVTDKWVKVLNRTT 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29493896 29499682 - ClG42_07g0148900.10 Clacu07g1489 254087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1489 679 Coils Coil 620 640 - -
Clacu07g1489 679 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Clacu07g1489 679 CDD STKc_IRAK 361 630 - -
Clacu07g1489 679 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Clacu07g1489 679 ProSiteProfiles Protein kinase domain profile. 355 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1489 679 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 332 431 - -
Clacu07g1489 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1489 679 SUPERFAMILY Protein kinase-like (PK-like) 336 631 IPR011009 -
Clacu07g1489 679 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524(InterPro)
Clacu07g1489 679 Pfam Protein kinase domain 356 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1489 679 SMART serkin_6 355 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1489 679 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 672 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu07g1489 679 Pfam Wall-associated receptor kinase C-terminal 160 230 IPR032872 -
Clacu07g1489 679 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247(InterPro)
Clacu07g1489 679 FunFam Wall-associated receptor kinase-like 20 432 640 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1156 Clacu-Chr4:25718342 Clacu07g1489 Clacu-Chr7:29493896 3.70E-119 dispersed
Clacu05g2448 Clacu-Chr5:32642281 Clacu07g1489 Clacu-Chr7:29493896 4.50E-122 dispersed
Clacu07g1489 Clacu-Chr7:29493896 Clacu11g1083 Clacu-Chr11:13526810 1.30E-143 dispersed
Clacu07g1489 Clacu-Chr7:29493896 Clacu06g1572 Clacu-Chr6:26586358 3.30E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73718 PF00069 Pkinase 3.20E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1489 - - - 0.0