Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1503 ATGGACAATAATACCTACAACAACTTACACATTGTGAATGGTTACAACAAGAGGCGTGCATATGATTGTCGAGTGTTAGAATTCAATTGCTCTCTCTCTCTCTCTCTGGAAATTAAAGTTCGAGTAGTTCGTTGTCCCAGATGCGAGAATCTCTTGCCTGAACCTTCTGGACTTCCTGTTTATCAGTGTGGTGGGTGTGGTACTGTTCTTAGAGCTAAGAGCAAAGTTCTCCTTAATGAGAAAAGGGATTCTGGGAGCATTGAGAAAAATGAGTGTTTATCAGAACAAGGAGGTAGCAGTTTAGGTGGTGTATCTGACACTGAGTGGGACAGTCCAAGCATGGAGCCAACTGTAAAAGAGAGAGTCTTAAGGTCCAAAAGGACTGTCTTCAGCAACAGTCCAATTAGAACAAATGATAGAGAGAATATAGATGACTATGAGAGGAAAATTGGGATGGAAACTAAGGGAGTTTGGCCTATGCAGAGGCTTGGAGATAAAGAAGTTGGTTTGGTTGCACAAACACACAGTCAATTTTCAGAACAACGTATCGAGAATTGGGTTCGTCGATATAATATTGAACAAGACATGAATATTTATGATTCTGATTCTCCAAGTACAGCACCTTATCCTGATCCTATTGGAGCAGCGAGAATCCGAGCTACTTTTCAGCATCATAGAGTCGAAAGAGATGCATTCACAGGGTACTCTAGAAACTCCATGGCTGTTGCTCATGGAAAAGGAGCTCCGAATTTCTGTTATCCTAGTGACAGACCTTCAAGTTCTAATTTGGACTTGTTCTATGGCCGTCCCGAGCCTAATCGGAACTATGAAGGTCCTATAGAAGGCTTAGACCCGAATCGAGCTGAACTCCTAAGAAGGTTGGATGAGTTGAAAGACCAAATTATTAAGTCCTGTGATGTAGGAGATAGACCAAGAGTTGTTGCTGATAGAGCTCCAGTTGATCCATACTACGGTCGAACTACTTACAATGTCCCAATGCGATCTTCGACAAAGAGCCCACAGCACATCCATGGTCCTCAGTACTTTGATCAGGGCAATGGAACCTTTCCAGCATCTGGTCATCATCAAAGAAATGGTGAGGATTTTTTACATCCTCCGAGGCATGTTGTGGAAGATATACCATTGTACGAGGATCAGTTTCAGGAGCAAATGATAAGGAAGACTAACTATCTGCCTACTCATCAGTATCCTCCACGGCTTCCTCGTGAACGCTATCCAGAAAGCTTCATGGATTTCAAACAAGATCCTCTTTCTCCACCACATCTTGCTGAAGATGCTTTCTTTCACCATCCTGCCTGCTCTTGTTCACAATGCAGCAAAAGAAACAGGCAAGGCCCTCCTCTTCAAGGGCCAAACTCTCCTGTAAGCAATGTAAGTAATCCAAAAGAGGCAATCAAATCTAGCACGTTTCATGATGAGAATCCTGTTACAGTTGGACTCAAGGCTTCCAATCTGCCGCGTGTTGGTCGTTTTCCATCTCAAGATACAGTTCCACACTCTAGACAACCTAGTGAGCTTGATTCAGAGATTGATGGTTTTGGTCCGGTTCAACCAAGAATGGTTGCAGTTTTTCGGAGAAATGGAAAATCTAGCGATGCCATTGCCGGTGGTGCTCCATTCATTGTATGCACTAGTTGCTTGGAATTGCTAAAACTGCCGAGAAAACTCTACAAGTTGGAGATGGATTGGCAGAAACTGCAGTGTGGTGCTTGTTCTGTTGTCATTATTGTAAAAGTAGAAAACAGAAAGCTCGTTGTTAGCGTTCCAGCAGAAACCAAGCCTGAAGAAGTTTCTCCTGATGATGGTACCCCCAAAGTTGTCAATGCTACCAGCTCCATAGAAAGTTCTGATAGTTCTAGTCACAAAGTGATCGGTACTGACCATGACAAGTCCTCTAATGACCAGGATTCAAATTGTGGTGAGTCTGAAACGCAGGAGCTAACTTCTCCTCTCATTTCTACCGAGGAAAAAGAGACGCCAACTATAAATTGTGATTCGAAAAATCTCTCTGACTCTGCTGACCTGCCTTCAAAAGATACTCCATCTGTAGTAAGTTCCACGGAGAACTCTGATAACCCTTCTTTTAATGAACCTAGCAAATACAGAGAGGGAAGTGAAAATAAGCAGAACATTTTGGTAGATGATGTCACCAAACCAAATGAGTTAGACGTCTCGTTTGAAGATTATTCAAACATTCATATTTCTCAAGATTCTGTGGAAATAAACAAAGAAGAAGAAGAAGGGGAAGAAGAAGATCAAAGCAAGATCAAAAGCAATCAAGAATCTGAAACCTTCTTTGTGGGTCTCAGTAGGAACAACTTAAGAGATTTTTCAAGATCAAGTGAAATTACGGATAATGGAAGGCCTACAGTTTCGGTTAATGGGCAGCATTTACCAGCTCATGTAGTAAAAAAGGCTGAAAAGAAAGCTGGGCCCATTCTTCCTGGAGATTATTGGTACGATTATCAAGCTGGATTCTGGGGTGTAATGGGCCATCCATGTCTTGGTATTATTCCTCCATTTATTGACGAGTTCACCTATCCAATGTCGAGGAACTGTGCTGCTGGAAACACTGGAATCTTTGTCAATGGGAGAGAACTTCATAAAAGGGATCTGGAGTTGCTTTCTAGCAGAGGGTTGCCTACTACTGCAAATAAATTGTATAGAATCGACATTTCGGGAAGAGTTTTAGATGAAGATTCTGGAAAAGAGTTATTTAACCTGGGAAAACTCGCTCCAACCATTGAGAAGGTAAAACATGGGTTTGGCATGAAAGTACCAAGAACACTCAAGTGA 2817 42.1 MDNNTYNNLHIVNGYNKRRAYDCRVLEFNCSLSLSLEIKVRVVRCPRCENLLPEPSGLPVYQCGGCGTVLRAKSKVLLNEKRDSGSIEKNECLSEQGGSSLGGVSDTEWDSPSMEPTVKERVLRSKRTVFSNSPIRTNDRENIDDYERKIGMETKGVWPMQRLGDKEVGLVAQTHSQFSEQRIENWVRRYNIEQDMNIYDSDSPSTAPYPDPIGAARIRATFQHHRVERDAFTGYSRNSMAVAHGKGAPNFCYPSDRPSSSNLDLFYGRPEPNRNYEGPIEGLDPNRAELLRRLDELKDQIIKSCDVGDRPRVVADRAPVDPYYGRTTYNVPMRSSTKSPQHIHGPQYFDQGNGTFPASGHHQRNGEDFLHPPRHVVEDIPLYEDQFQEQMIRKTNYLPTHQYPPRLPRERYPESFMDFKQDPLSPPHLAEDAFFHHPACSCSQCSKRNRQGPPLQGPNSPVSNVSNPKEAIKSSTFHDENPVTVGLKASNLPRVGRFPSQDTVPHSRQPSELDSEIDGFGPVQPRMVAVFRRNGKSSDAIAGGAPFIVCTSCLELLKLPRKLYKLEMDWQKLQCGACSVVIIVKVENRKLVVSVPAETKPEEVSPDDGTPKVVNATSSIESSDSSSHKVIGTDHDKSSNDQDSNCGESETQELTSPLISTEEKETPTINCDSKNLSDSADLPSKDTPSVVSSTENSDNPSFNEPSKYREGSENKQNILVDDVTKPNELDVSFEDYSNIHISQDSVEINKEEEEGEEEDQSKIKSNQESETFFVGLSRNNLRDFSRSSEITDNGRPTVSVNGQHLPAHVVKKAEKKAGPILPGDYWYDYQAGFWGVMGHPCLGIIPPFIDEFTYPMSRNCAAGNTGIFVNGRELHKRDLELLSSRGLPTTANKLYRIDISGRVLDEDSGKELFNLGKLAPTIEKVKHGFGMKVPRTLK 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29621443 29626660 + ClG42_07g0150300.10 Clacu07g1503 254101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1503 938 MobiDBLite consensus disorder prediction 628 643 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 445 519 - -
Clacu07g1503 938 Pfam Enhanced disease resistance 4-like, N-terminal domain 39 71 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 742 769 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 644 707 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 445 481 - -
Clacu07g1503 938 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 38 888 IPR040244 GO:1900150(InterPro)
Clacu07g1503 938 MobiDBLite consensus disorder prediction 611 627 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 598 718 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 95 118 - -
Clacu07g1503 938 MobiDBLite consensus disorder prediction 95 112 - -
Clacu07g1503 938 Pfam Probable zinc-ribbon domain 542 586 IPR021480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0111 Clacu-Chr5:1171944 Clacu07g1503 Clacu-Chr7:29621443 2.90E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004376 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 5 1 43