Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1515 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCCTCCTCTTAGCCTTTTTATTCATTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTCCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGGTTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTAGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTCAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGTATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGAGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTAACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAATTCCACGAGGTGCAAAATATGGGTTGATCATCGGTGTGGGAATCCCAGGAGTCCTCTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGACCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCACTTTTACCAAAGCAGGCCTCGACGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGGCAGAGCAGACGACTTCCAAAGTCCAACGACACCACATGCGCCATATGCTTGTCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAACGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCAATCCATGTCAGTGCCAACGTCGCCGCAATCGGGCAAAAAGGACTTTTCAATAGAATATTATTTCCCTTCTAAACCCAAAACCCTTATTTGCATCTCTTCGTACGCGCCACGCTTCGATTCCGGCCTCCTCCCTTCTCCGCTTCAGTCCTTGCGATCGCCGGCGAGCTCACAGTCAGTGTCAATGGCTTATAGGCGCAGCCTTTGCTCAAGAGCAAATCTTATAGCTCGACAGTGCCATCCATCAATTAGTGTTTTTGGTCAAACGGATGACCGTAAAAAGCAACATTTGGATGAAGATTCAATTTCCCATGACAAAGTCAATAGTTTCCTGCAGAGGAGATCATTTGGAACCAGCTTTAATAAGTCGTCCAGGTCTAACTTTTTTGCTCACGATAGACAATATCCAAACACTTTCCTCTCGTCAAGCGCTGGTTTCCTTTTCTGTCGCTACATGTCAAGTACTATTGGTGAAGGGTCTGAAAAAATTGAATTCATGAGTAATGTTGCAGAAGTTCTCACAGATACAACAGTTCAATCGGCAGCATCTCAGGCTACTGCTGCTAATGAAGTAGCCATTGCTGCTGCTGATTCTTTTCTCCCGGTCAAGGGTGTGCAGTACTTTATAGATGGTATTCATTCTTTTACTGGATTAAATTGGTGGGCTTGCATTGTATTAACAACCCTACTGATTCGTGGTGCAACAGTCCCTCTTTTGATAAATCAACTCAAATCTACTGCCAAGCTTACTTTGTTAAGGCCTCACTTGGAGGAAGTTAAGAACGAGATGCAAGAAAAGGGTATGGATCCAAGGGCTGTTGCTGAGGGTCAACAAAAAATGAAAAAACTTTTTAATGAGTTTGGTGTGAGCCCATTTACCCCATTGAAGGGACTTTTTATTCAGGGTCCTGTCTTCATCAGCTTTTTCCTCGCAGTTACAAACATGGCAGAGAAAATGCCTTCATTTAAAAATGGTGGAGCATACTGGTTTGTTGATCTCACGACTCCAGATACGATGTACATTTTCCCAGTTTTAACCGCGCTCACATTCTGGATCACAGTGGAGTGCAACTTGCAAGAAGGTTTGGAAGGTAATCCTGTTGCTAGCACAATGAAAAATGTGATGAGGGGTCTTGCTATTGCTACGGTTCCCTTGACCATGAATTTTCCAAAGGCAATATTCTGTTACTGGGTTACATCTAATTTGTTCTCACTTGTATACGGGGCTGCTCTCAAAGTTCCTGGGGTTAAGAAGGCCTTGGGTGTTCCTGAAATACCAGTGGCCAATACGAACACGACTCCGCGACCTGCCTTCTCATTTCTTACAGCTATGAAACAAGCAACAGCAGCATCCAATGAAGCTACCACGACAACATTAACCGCTCAACCGTCACAGTCCCAAGACCGAAAAATTTCATCATCGTCAGTCATTAGCCAGAGGCTTAGAAGTTTGGAGAAAGAAGTGAAGGGAAGGAGAAAGATGAAGAATAAGAAAAAGTGA 2625 45.71 MAVSKFSVAVLLLLAFLFINGAESQFLCKSSSCNGVSSPDVRFPFRLKNSQDSRCGYQPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGIPRGAKYGLIIGVGIPGVLFIIGLVCYICGRFKAFARPNRPTSHLSLSLGHQPTFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSQSMSVPTSPQSGKKDFSIEYYFPSKPKTLICISSYAPRFDSGLLPSPLQSLRSPASSQSVSMAYRRSLCSRANLIARQCHPSISVFGQTDDRKKQHLDEDSISHDKVNSFLQRRSFGTSFNKSSRSNFFAHDRQYPNTFLSSSAGFLFCRYMSSTIGEGSEKIEFMSNVAEVLTDTTVQSAASQATAANEVAIAAADSFLPVKGVQYFIDGIHSFTGLNWWACIVLTTLLIRGATVPLLINQLKSTAKLTLLRPHLEEVKNEMQEKGMDPRAVAEGQQKMKKLFNEFGVSPFTPLKGLFIQGPVFISFFLAVTNMAEKMPSFKNGGAYWFVDLTTPDTMYIFPVLTALTFWITVECNLQEGLEGNPVASTMKNVMRGLAIATVPLTMNFPKAIFCYWVTSNLFSLVYGAALKVPGVKKALGVPEIPVANTNTTPRPAFSFLTAMKQATAASNEATTTTLTAQPSQSQDRKISSSSVISQRLRSLEKEVKGRRKMKNKKK 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29760181 29773443 - ClG42_07g0151500.10 Clacu07g1515 254113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1515 874 Pfam Wall-associated receptor kinase C-terminal 188 227 IPR032872 -
Clacu07g1515 874 SMART ring_2 320 361 IPR001841 -
Clacu07g1515 874 CDD 5TM_Oxa1-like 592 789 - -
Clacu07g1515 874 Pfam Ring finger domain 319 362 IPR001841 -
Clacu07g1515 874 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 366 IPR046948 -
Clacu07g1515 874 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247(InterPro)
Clacu07g1515 874 MobiDBLite consensus disorder prediction 365 385 - -
Clacu07g1515 874 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Clacu07g1515 874 CDD RING-H2_EL5-like 320 362 - -
Clacu07g1515 874 Pfam 60Kd inner membrane protein 595 781 IPR028055 -
Clacu07g1515 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 367 IPR013083 -
Clacu07g1515 874 MobiDBLite consensus disorder prediction 829 853 - -
Clacu07g1515 874 NCBIfam membrane protein insertase YidC 594 781 IPR028055 -
Clacu07g1515 874 SUPERFAMILY RING/U-box 314 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1515 K03217 - - csv:101223070 701.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0094 Clacu-Chr5:1056048 Clacu07g1515 Clacu-Chr7:29760181 1.30E-57 dispersed
Clacu07g1515 Clacu-Chr7:29760181 Clacu08g1228 Clacu-Chr8:22179692 1.30E-23 dispersed
Clacu01g0658 Clacu-Chr1:7019727 Clacu07g1515 Clacu-Chr7:29760181 6.20E-09 transposed
Clacu01g1573 Clacu-Chr1:27817923 Clacu07g1515 Clacu-Chr7:29760181 2.40E-19 transposed
Clacu05g0207 Clacu-Chr5:1838311 Clacu07g1515 Clacu-Chr7:29760181 9.00E-12 transposed
Clacu09g2171 Clacu-Chr9:36444438 Clacu07g1515 Clacu-Chr7:29760181 2.00E-10 transposed
Clacu10g1642 Clacu-Chr10:29804694 Clacu07g1515 Clacu-Chr7:29760181 2.00E-09 transposed
Clacu10g1799 Clacu-Chr10:31602422 Clacu07g1515 Clacu-Chr7:29760181 2.20E-17 transposed
Clacu05g1044 Clacu-Chr5:9262110 Clacu07g1515 Clacu-Chr7:29760181 7.80E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003609 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 4 1 47