Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1533 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTCAATTCCCGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACCCAAGACTGATTTCTCCATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTATACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA 504 47.82 MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29973013 29977107 + ClG42_07g0153300.10 Clacu07g1533 254131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1533 167 FunFam Transcription factor bHLH113 family 44 120 - -
Clacu07g1533 167 Gene3D - 42 124 IPR036638 GO:0046983(InterPro)
Clacu07g1533 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 136 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu07g1533 167 SMART finulus 53 100 IPR011598 GO:0046983(InterPro)
Clacu07g1533 167 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Clacu07g1533 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 108 IPR036638 GO:0046983(InterPro)
Clacu07g1533 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1533 Clacu-Chr7:29973013 Clacu10g0589 Clacu-Chr10:7486019 3.80E-25 dispersed
Clacu07g1533 Clacu-Chr7:29973013 Clacu01g2316 Clacu-Chr1:34026739 7.10E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1533 - - - 0.0