Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1547 ATGGAGAAAAACCCACCCCCAGAAAAGTCTGAAAGTTTTTCTAAAAATTTCAATAGAAGGATTGCTAATTTGGGCTCACCTCGACGGACTCCCGACGCTGCTGCTGCTGATGCTAAATCAGATTCCGAAAAGCTTGCTGCTGATCGAGATGATGATGCCTTCATTGAAGACCCTCTTTCCGAATCTGATACGGCCTTGATTTTTGAAGAGGTTGATCGATTCCTCGAGACTTTGTCCAATGTTGGAGACGATGGATCGAATCTAATCCATGAAATTCCAAGCTCCATTCATTCGTTGTCGAAAATGGTGGACTCCATGATCTCCAGGTACAATTCTAACAAATACCCGGCGAAGCTTGGCAAAGATCCCGACCGGGATTCTTCCTTTTTTGAAGCTTTAGGTCGCATTTCCAAGATTGCTATTAAATTAAGCGAATTCCCTACCAGCACTGCCTCGATTCCTTCTCTCAATCGAACCACCACGGCTCTACAGCGAGCGATGTCGTTATTGGATGAAGAATTCAATGCCCTTTTGAAAGAATGCAAACATCGAGAGCTAGATTCGAAACCTGACAAGAAAGCATCAAAGCAGTCGTCGTTCAAAACAATCAACGAATCAGCAGATCAACAAAACAGCACCATTCCCGAATCATCCGAGTCCGATTCTGCTAAGGAAGAGATATTCCCCTCTTTCTCGCAGGAAACTATATCAAATATGAAAAGAATTGCCGGAGCAATGATCTCTGCTGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTCCGGCAGAGCTCGTTCAAAGGAATATTGAACAAGCTAGGGTACGAAAGTATTAGCATAGACGAGATTCAAAAAATGCAATGGGAGACTCTTCAATCAGAAATCGACAAATGGATCGCCGTCGTCAAGAAATGCTCAAAATCTCTGTTCCCAGGCGAGTGGAAGCTTTGTGATTCTGTTTTCACCGATTATCCCTTCATTTCTCATACGCTCTTCAGCAATTTAACAAGAGCAGTAGTCATCAAACTTCTCAACTTCGCAAACGCCGTCGTTTTGACAAAACGATCCGCAGAGAAGATGTTCAAATTACTTGACATGTACGAAACAATCCGAGATTTAATTCCGGCCATCAATGGCTTCCCCGAAAATTGCAGAACAGAGCTAATTTCCGAAGCGGAAGGGGCAAAAAGTGGTATAGGCGAAGCAATAGTCGGCATTTTCTATGACCTAGAGAGCTCAATCAAAAGCGACAACGCGAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTGACGCGCTACATAATGAATTACCTAAAATATGCTTGCGAGTACAAAGAAACCCTAGAACAGGTCTTCCAATTTCTCGACCCAAAAGTTGAAGAAGACCGACCGGCAAGAATGGACGAGAACGACGACGCGTCGCCGAGAAAGTCTCAGCTCGCAATTCAGATTGCAATGGTGATGGATCTACTCGACGCGAATCTCACAATGAGATCGAAACTATACCGCGACGCATCTCTTCGGTACATCTTCCTGATGAACAACGGAAGGTACATAGTACAGAAAATCAAAGGCTCAAGCGGAATTACCGAGTTGATGGGCGACCGTTGGTGCCGTAAACGATCGACGAATCTGCGACAATACCACAAAAATTACCAGAGAGAAACATGGAGTAAGGTATTGCAGTGCCTAAGCCACGAAGGATTGCTGGTGAACGGGAAGGTATCGAAGCCAATATTGAAGGAGAGATTCAAAAGTTTCAACGCGATGTTCGACGAAATACACAAAACGCAAAGCAGTTGGGTAGTGAGTGACGAGCAGCTTCAATCGGAGCTTAGGATTTCGGTGTCGGCGGTGATGATTCCAGCGTACCGTTCGTTCGTTGGGAGATTCAAGCAGCATTTCGATCCGGGAAGACAATCGGAGAAGTACATAAAGTATCAACCTGAAGACATTGAAGGTTTGATCGATGACCTGTTTGATGGAAATACTGCTTCCATGGGGAGAAGAAGAGCGTAG 2025 44.69 MEKNPPPEKSESFSKNFNRRIANLGSPRRTPDAAAADAKSDSEKLAADRDDDAFIEDPLSESDTALIFEEVDRFLETLSNVGDDGSNLIHEIPSSIHSLSKMVDSMISRYNSNKYPAKLGKDPDRDSSFFEALGRISKIAIKLSEFPTSTASIPSLNRTTTALQRAMSLLDEEFNALLKECKHRELDSKPDKKASKQSSFKTINESADQQNSTIPESSESDSAKEEIFPSFSQETISNMKRIAGAMISAGYEKECCMSYSFLRQSSFKGILNKLGYESISIDEIQKMQWETLQSEIDKWIAVVKKCSKSLFPGEWKLCDSVFTDYPFISHTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLIPAINGFPENCRTELISEAEGAKSGIGEAIVGIFYDLESSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFQFLDPKVEEDRPARMDENDDASPRKSQLAIQIAMVMDLLDANLTMRSKLYRDASLRYIFLMNNGRYIVQKIKGSSGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLSHEGLLVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRA 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30101243 30103267 - ClG42_07g0154700.10 Clacu07g1547 254145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1547 674 SUPERFAMILY Cullin repeat-like 118 663 IPR016159 -
Clacu07g1547 674 MobiDBLite consensus disorder prediction 1 15 - -
Clacu07g1547 674 MobiDBLite consensus disorder prediction 185 225 - -
Clacu07g1547 674 MobiDBLite consensus disorder prediction 1 54 - -
Clacu07g1547 674 Pfam Exo70 exocyst complex subunit C-terminal 298 660 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu07g1547 674 Gene3D Exocyst complex component Exo70 113 672 - -
Clacu07g1547 674 MobiDBLite consensus disorder prediction 199 225 - -
Clacu07g1547 674 PANTHER EXOCYST COMPLEX PROTEIN EXO70 100 665 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu07g1547 674 MobiDBLite consensus disorder prediction 34 53 - -
Clacu07g1547 674 FunFam Exocyst subunit Exo70 family protein 112 670 - -
Clacu07g1547 674 Pfam Exocyst complex component Exo70 N-terminal 101 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1547 K07195 - - csv:101220402 1243.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0869 Clacu-Chr1:9936741 Clacu07g1547 Clacu-Chr7:30101243 1.20E-173 dispersed
Clacu07g1547 Clacu-Chr7:30101243 Clacu07g1639 Clacu-Chr7:30949683 1.30E-71 dispersed
Clacu07g1547 Clacu-Chr7:30101243 Clacu03g0202 Clacu-Chr3:2230838 9.40E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2379 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.7e-266 913.7
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Clacu05g2379 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Clacu01g1567 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Clacu05g2379 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.7e-166 580.9
Clacu03g0048 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Clacu03g0048 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Clacu07g1547 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Clacu01g0869 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 5.9e-189 657.9
Clacu07g1457 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Clacu07g1457 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Clacu07g1457 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Clacu03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 3.8e-225 778.1
Clacu03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.8e-211 732.6
Clacu08g1414 . 47 718 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Clacu10g2053 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005149 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 41