Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu07g1556 | ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACTGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCGACAGACGACATGTCGTTCGATGCGACGAGTAGAATGAAGGACGACGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACAACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA | 588 | 44.73 | MVFSRASQLVEMQRGDCFTQPPPVSGGFPLFRDVPTDDMSFDATSRMKDDDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30210380 | 30214608 | + | ClG42_07g0155600.10 | Clacu07g1556 | 254154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu07g1556 | 195 | Pfam | WRKY DNA -binding domain | 117 | 174 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu07g1556 | 195 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 83 | 176 | IPR044810 | GO:0003700(InterPro) | |
Clacu07g1556 | 195 | FunFam | WRKY transcription factor 57 | 102 | 176 | - | - | |
Clacu07g1556 | 195 | ProSiteProfiles | WRKY domain profile. | 111 | 176 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu07g1556 | 195 | SMART | WRKY_cls | 116 | 175 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu07g1556 | 195 | Gene3D | WRKY domain | 101 | 175 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu07g1556 | 195 | SUPERFAMILY | WRKY DNA-binding domain | 108 | 175 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0146 | Clacu-Chr5:1390016 | Clacu07g1556 | Clacu-Chr7:30210380 | 1.50E-27 | dispersed | |
Clacu05g1519 | Clacu-Chr5:18962948 | Clacu07g1556 | Clacu-Chr7:30210380 | 2.30E-46 | dispersed | |
Clacu07g1556 | Clacu-Chr7:30210380 | Clacu11g0932 | Clacu-Chr11:9006056 | 2.50E-44 | dispersed | |
Clacu07g1556 | Clacu-Chr7:30210380 | Clacu07g0779 | Clacu-Chr7:19700126 | 2.00E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48088 | PF03106 | WRKY | 9.60E-26 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu07g1556 | - | - | - | 0.0 |