Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1556 ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACTGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCGACAGACGACATGTCGTTCGATGCGACGAGTAGAATGAAGGACGACGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACAACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 588 44.73 MVFSRASQLVEMQRGDCFTQPPPVSGGFPLFRDVPTDDMSFDATSRMKDDDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30210380 30214608 + ClG42_07g0155600.10 Clacu07g1556 254154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1556 195 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g1556 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 176 IPR044810 GO:0003700(InterPro)
Clacu07g1556 195 FunFam WRKY transcription factor 57 102 176 - -
Clacu07g1556 195 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g1556 195 SMART WRKY_cls 116 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g1556 195 Gene3D WRKY domain 101 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu07g1556 195 SUPERFAMILY WRKY DNA-binding domain 108 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0146 Clacu-Chr5:1390016 Clacu07g1556 Clacu-Chr7:30210380 1.50E-27 dispersed
Clacu05g1519 Clacu-Chr5:18962948 Clacu07g1556 Clacu-Chr7:30210380 2.30E-46 dispersed
Clacu07g1556 Clacu-Chr7:30210380 Clacu11g0932 Clacu-Chr11:9006056 2.50E-44 dispersed
Clacu07g1556 Clacu-Chr7:30210380 Clacu07g0779 Clacu-Chr7:19700126 2.00E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48088 PF03106 WRKY 9.60E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1556 - - - 0.0