Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1562 ATGTCCACCGTCGTCGGTTCGGTGTCCACTAAGGATGTTAATTTCAATCCTGAAGTGGGAGAGGAAGAGGTGGTTAGGACAATGAACCAACCACAAGAAGAAGATCAGATCATCATCATCCAGGAAGATGATCAAGACAACATACTTAAGCTAAGGAGAGGGATGGATCTTGGTCCTCAATTCTCTCTCAAGGAACAACTCGACAAAGATAAGGATGATGAAAGCTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTGGATCTCTCAGCCATTGGAGCAGAAAGCAAAGAAGCAGAAGTGAAAATCCTGAGCCTAACAATCCAATGTCCAGGGAGGGAAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTACCAGCCTCTTCTCCTTAAAGGAAGGCTCCCGGTACCAACTCCGGTTCAATTTCGTCGTTGCCGGGAATATCGTCTCCGGTCTCAAATACACAAACACTGTCTGGAAGACTGGTGTTAAAGTGGATCATACAAAGAAAATGCTTGGAACTTTCAGTCCTCAGAAGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACACCCTCTGGAGTGTTTGCAAGAGGGTCCTATTCTGCAAGGACAAAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTTAGTTACCACTTTGAAATCCAAAAGAATTGGGCAGCATCCTCTTGA 711 44.44 MSTVVGSVSTKDVNFNPEVGEEEVVRTMNQPQEEDQIIIIQEDDQDNILKLRRGMDLGPQFSLKEQLDKDKDDESLRKWKEQLLGSVDLSAIGAESKEAEVKILSLTIQCPGREDLVLPLPFTKTSKSTSLFSLKEGSRYQLRFNFVVAGNIVSGLKYTNTVWKTGVKVDHTKKMLGTFSPQKEPYVYEMEEETTPSGVFARGSYSARTKFVDDDGKCYLDVSYHFEIQKNWAASS 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30271275 30273639 - ClG42_07g0156200.10 Clacu07g1562 254160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1562 236 FunFam Rho GDP-dissociation inhibitor 1 53 234 - -
Clacu07g1562 236 PRINTS RHO protein GDP dissociation inhibitor signature 152 168 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Clacu07g1562 236 PRINTS RHO protein GDP dissociation inhibitor signature 211 228 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Clacu07g1562 236 PRINTS RHO protein GDP dissociation inhibitor signature 169 184 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Clacu07g1562 236 Pfam RHO protein GDP dissociation inhibitor 46 231 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Clacu07g1562 236 SUPERFAMILY E set domains 41 232 IPR014756 -
Clacu07g1562 236 Gene3D Coagulation Factor XIII, subunit A, domain 1 53 234 IPR024792 -
Clacu07g1562 236 PANTHER RHO GDP-DISSOCIATION INHIBITOR 34 232 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1562 K12462 - - csv:101219208 337.035
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0260 Clacu-Chr2:2407287 Clacu07g1562 Clacu-Chr7:30271275 1.70E-63 dispersed
Clacu07g0115 Clacu-Chr7:1603890 Clacu07g1562 Clacu-Chr7:30271275 1.40E-48 dispersed
Clacu07g1562 Clacu-Chr7:30271275 Clacu01g2219 Clacu-Chr1:33449800 8.70E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00750 . . . . . . . . . . . . . . . . . . Cla07g01471 Cam07g1571 Cec07g1670 Cco07g1631 Clacu07g1562 Cmu07g1530 Cre07g1906 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012234 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29