Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1577 ATGTTAGGGAATGGTCGGTGCGAGGCGATGTGCATCGATGGGACAAAGCGACTTTGCCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATACTTGTGGGGCTTCGTGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAAGCATATGGTGAACTTCCAGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGATTATCTTGAGTTTGAGGATGAAGATATCGACAAGATTTAG 318 46.23 MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30424917 30425234 + ClG42_07g0157700.10 Clacu07g1577 254175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1577 105 CDD S1_IF1A 1 69 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu07g1577 105 ProSiteProfiles S1 domain IF1 type profile. 1 56 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu07g1577 105 ProSitePatterns Eukaryotic initiation factor 1A signature. 1 23 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu07g1577 105 Pfam Translation initiation factor 1A / IF-1 1 53 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu07g1577 105 PANTHER EIF-1A 1 105 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Clacu07g1577 105 SUPERFAMILY Nucleic acid-binding proteins 1 104 IPR012340 -
Clacu07g1577 105 Gene3D - 1 105 IPR012340 -
Clacu07g1577 105 SMART eIF1neu4 1 70 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0248 Clacu-Chr2:2317281 Clacu07g1577 Clacu-Chr7:30424917 3.80E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1577 K03236 - rcu:8265575 196.823