Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1578 ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA 894 41.83 MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30426862 30430210 + ClG42_07g0157800.10 Clacu07g1578 254176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1578 297 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523(InterPro)
Clacu07g1578 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523(InterPro)
Clacu07g1578 297 FunFam Ribonuclease 188 234 - -
Clacu07g1578 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 277 IPR001352 GO:0003723(InterPro)|GO:0004523(InterPro)|GO:0004523(PANTHER)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Clacu07g1578 297 FunFam Ribonuclease 1 186 - -
Clacu07g1578 297 CDD RNase_HII_eukaryota_like 17 233 - -
Clacu07g1578 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523(InterPro)
Clacu07g1578 297 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
Clacu07g1578 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Clacu07g1578 297 Gene3D - 1 186 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2375 Clacu-Chr5:32101303 Clacu07g1578 Clacu-Chr7:30426862 1.50E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1578 K10743 - csv:101210143 576.244