Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu07g1578 | ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA | 894 | 41.83 | MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30426862 | 30430210 | + | ClG42_07g0157800.10 | Clacu07g1578 | 254176 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu07g1578 | 297 | Gene3D | Ribonuclease hii. Domain 2 | 187 | 234 | IPR023160 | GO:0004523(InterPro) | |
Clacu07g1578 | 297 | Pfam | Ribonuclease HII | 17 | 227 | IPR024567 | GO:0004523(InterPro) | |
Clacu07g1578 | 297 | FunFam | Ribonuclease | 188 | 234 | - | - | |
Clacu07g1578 | 297 | PANTHER | RIBONUCLEASE H2 SUBUNIT A | 5 | 277 | IPR001352 | GO:0003723(InterPro)|GO:0004523(InterPro)|GO:0004523(PANTHER)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER) | |
Clacu07g1578 | 297 | FunFam | Ribonuclease | 1 | 186 | - | - | |
Clacu07g1578 | 297 | CDD | RNase_HII_eukaryota_like | 17 | 233 | - | - | |
Clacu07g1578 | 297 | ProSiteProfiles | Ribonuclease (RNase) H type-2 domain profile. | 14 | 236 | IPR024567 | GO:0004523(InterPro) | |
Clacu07g1578 | 297 | NCBIfam | ribonuclease HII | 16 | 228 | IPR004649 | GO:0004523(InterPro)|GO:0016070(InterPro) | |
Clacu07g1578 | 297 | SUPERFAMILY | Ribonuclease H-like | 15 | 232 | IPR012337 | - | |
Clacu07g1578 | 297 | Gene3D | - | 1 | 186 | IPR036397 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2375 | Clacu-Chr5:32101303 | Clacu07g1578 | Clacu-Chr7:30426862 | 1.50E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu07g1578 | K10743 | - | csv:101210143 | 576.244 |