Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1580 ATGGGGTTATTCTTGTTGGTGGATTTGGTTGTTTTGTTCTTGAAGAAGATGTGTGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTTTGTTGGTGTCGGGTTTAGGTTCAATGTCCCCTGTTGCTGTTTCTTATGGGGAGAAAGGGCCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCAAATTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTGATGGGTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAACCTTATTGTTGGGGAAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGGAGCTCAATACCTGGAAATTAGTGCTGGTGATTATCATCTGTGTGGACTTCGAACGCCTCTGACTGGAAGGCGTAGGAACACTTCGTTTGTCGATTGTTGGGGTTACAACATGACCAGAACCTTTGCTTTTGATGGCCCTATTGAATCGATCTCTGCGGGGTCTGAGTTCAACTGTGGGCTGTTCTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACAAGCAGCCGGGTAATCAGTTTGATTCCTAAAGATATGAGGTTTCAAAGGATTGCATCCGGTGGATATCATGTTTGCGGAATTTTAGAGGGCGCAAATTCGAGAGCATTCTGTTGGGGAAGGAGCTTAGACATTGAAGAGGAGATCTCAGTAGCATATTCAGGTGAAGGAAATGTAGACTTGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGCAAATTCCATGCCTGTGGAATAAAGAGCTTAGACCGTGGTGTGATTTGTTGGGGTTTTACGGTTAAGCCAAGTACTCCAGCACCAGATGGGATTAAAGTTTACGACATTGCAGCTGGAGATTACTTCACCTGTGGAATTCTAGCTGAAAAATCTCTCCTGCCTGTTTGCTGGGGTCTTGGATTTCCTACTTCTCTGCCTTTGGCTGTCTCACCTGGAATCTGTAAAGCGACTCCTTGTGCCCCTGGTTTCTACGAAATTAGCCAAGACAAAGCTCGGTGTAAATCGCCGAGTTTTCATGTGTGTTTGCCCTGCAGTACTGCTTGCCCTCCTGATATGTACCAAAAATTTGAGTGCTCCTCAAAATCTGATAGGCAGTGTGAATATAATTGTTCAAGTTGCTTTTCAAGTGAATGCCTCTCAAACTGCTCATCCATGCTTTCAACTGGCATGATGGGGAAGAAAAATGGGAAGTACTGGCCTACGCAGCAGCTTCCAGTTCTTGTTGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATTGTGTCTTTAACTGCAATCTTATATGTTCGATACAAGTTACGGAATTGCCATTGCTCGGGAAAGGAGTTGAAGTCTAAGAAAAACAAAGGGACTGCCTCTTCCTTCCAGAAGGAAAGCTATAAAATACGTCCTGACTTGGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTACGAAGAACTTGAGAGAGCGACATGTGGGTTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTTTTTCGAGGCGTTTTAAAGGACGGGACAGTCGTAGCAGTAAAACGGGCTATAATGTCTCCCAACATGCAGAAGAATTCAAAGGAGTTCCATACTGAACTTGACTTGCTATCAAGATTAAACCATGCCCATTTGCTTAATCTGCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTGGTTTATGAGTTCATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACACGGCCTTAAAAGAACAATTAGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCTAGAGGAATCGAATACTTGCATGGCTATGCTTGTCCTCCAGTCATTCATCGAGACATTAAGTCGTCAAACATTCTCATCGATGAAGAACATAATGCTCGAGTCGCTGATTTTGGCTTGTCATTGTTGGGACCGACTGATAGTAGCTCTCCATTAGCCGAGCTACCAGCTGGGACTCTTGGCTATCTCGATCCTGAATACTATAGACTTCATTACCTTACCACCAAGTCTGATGTGTATAGCTTTGGTGTTTTGCTACTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCTCTGATAAGATCAGGAGATATCTCTGCAATTTTAGATCCGATATTGAAACCGCCCCCCGATATCGAGGCCTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGGGCAAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCATTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCGTGTAACGAACAACCAATCTTACCAACCGAGGTGGTCTTGGGAAGCAGCAGACTACACAAAAAGTCATCTCAAAGATCATCGAACCATTCAGTCTCCGAAACAGATATAGCAGAAGCTGAGGATCAAAGGTTCGAATTCAGGGCTCCGTCGTGGATTACATTCCCGAGTGTGACGTCATCGCAGAGGAGGAAATCCTCAGTGTCTGAAGCAGATGTAGATGGAAAGAATTTGGAAGGAAGAAATGTAGGGAATGGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGGCCTGCTTCCCCTCAAGAAAAGTTGTTCTTGGAGCACAATTTCTAA 2766 44.36 MGLFLLVDLVVLFLKKMCGWRGGLFVELVVFADMCLLVSGLGSMSPVAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKGAQYLEISAGDYHLCGLRTPLTGRRRNTSFVDCWGYNMTRTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDMRFQRIASGGYHVCGILEGANSRAFCWGRSLDIEEEISVAYSGEGNVDLVPVDPLDSVVGGKFHACGIKSLDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGFPTSLPLAVSPGICKATPCAPGFYEISQDKARCKSPSFHVCLPCSTACPPDMYQKFECSSKSDRQCEYNCSSCFSSECLSNCSSMLSTGMMGKKNGKYWPTQQLPVLVAEIAFAVFLVAIVSLTAILYVRYKLRNCHCSGKELKSKKNKGTASSFQKESYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNTALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIRSGDISAILDPILKPPPDIEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNHSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNLEGRNVGNGGGVGDGLKSLEEEIGPASPQEKLFLEHNF 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30441628 30444393 - ClG42_07g0158000.10 Clacu07g1580 254178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1580 921 Gene3D Phosphorylase Kinase; domain 1 494 600 - -
Clacu07g1580 921 Gene3D Transferase(Phosphotransferase) domain 1 601 808 - -
Clacu07g1580 921 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Clacu07g1580 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu07g1580 921 SMART TNFR_3 367 400 IPR001368 GO:0005515(InterPro)
Clacu07g1580 921 FunFam Receptor protein kinase CRINKLY4 601 803 - -
Clacu07g1580 921 SMART serkin_6 523 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1580 921 FunFam serine/threonine-protein kinase-like protein CCR1 493 600 - -
Clacu07g1580 921 MobiDBLite consensus disorder prediction 864 911 - -
Clacu07g1580 921 MobiDBLite consensus disorder prediction 824 840 - -
Clacu07g1580 921 FunFam Serine/threonine-protein kinase-like protein CR4 40 207 - -
Clacu07g1580 921 ProSiteProfiles Protein kinase domain profile. 523 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu07g1580 921 CDD STKc_IRAK 529 798 - -
Clacu07g1580 921 MobiDBLite consensus disorder prediction 824 843 - -
Clacu07g1580 921 Gene3D - 38 342 IPR009091 -
Clacu07g1580 921 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 36 845 - -
Clacu07g1580 921 SUPERFAMILY RCC1/BLIP-II 42 293 IPR009091 -
Clacu07g1580 921 SUPERFAMILY Protein kinase-like (PK-like) 505 796 IPR011009 -
Clacu07g1580 921 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 352 400 IPR001368 GO:0005515(InterPro)
Clacu07g1580 921 Pfam Protein tyrosine and serine/threonine kinase 526 795 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0940 Clacu-Chr4:23643501 Clacu07g1580 Clacu-Chr7:30441628 1.70E-85 dispersed
Clacu07g1580 Clacu-Chr7:30441628 Clacu08g0402 Clacu-Chr8:5297484 1.10E-86 dispersed
Clacu11g1532 Clacu-Chr11:26454439 Clacu07g1580 Clacu-Chr7:30441628 2.80E-43 dispersed
Clacu07g1580 Clacu-Chr7:30441628 Clacu07g0423 Clacu-Chr7:4918683 6.80E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73720 PF00069 Pkinase 1.30E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1580 - - - 0.0