Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1587 ATGAAGATTGAGGAGATTCTCTTCATCTGCAAGGAATTATCGATCGGAGGATCGAATTTCGATCCCCCAAAGCTCCCCGCAGCCTGTGTTTTTTCTTCTGAGGACCTTGTTAGGTATGATTGTGGCCTTCTTTTCGTCGTTGATGAATGTGTTTGTGGTGCTGCAGCGATGGCTAGATCTTTTTTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCTCCTCTCCGAGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCTCTTGTTACCGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCGACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCACTAACAGCTTTACAGGAGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCGAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACAAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTCCAATTTTATTATCGGAGCCTGACCCGTCAGCAAGCTCAACAACAAGCATGGCTTCAGAAAAGAAGGGCTGAGAACATGATGAGGAAGGCAGCAGGAGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTATTGCAATCAAATTAATGGTTCTGAGCTTCTTGTTTTAGATCTGAATTTCTCCCTTGAAAAATCAGATGCGGAGCAGGGAGAAGAAGGAAAGGAAGTTTGTGAGCACTTGTCTGCCCGGCTTTGTTGA 1221 43.49 MKIEEILFICKELSIGGSNFDPPKLPAACVFSSEDLVRYDCGLLFVVDECVCGAAAMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGSELLVLDLNFSLEKSDAEQGEEGKEVCEHLSARLC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30494904 30502839 + ClG42_07g0158700.10 Clacu07g1587 254185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1587 406 CDD MPN_eIF3h 75 338 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Clacu07g1587 406 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 72 389 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Clacu07g1587 406 SMART pad1_6 76 209 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Clacu07g1587 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 60 328 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
Clacu07g1587 406 ProSiteProfiles MPN domain profile. 77 210 IPR037518 -
Clacu07g1587 406 FunFam Eukaryotic translation initiation factor 3 subunit H 56 265 - -
Clacu07g1587 406 Pfam C-terminal region of eIF3h 195 370 IPR045810 -
Clacu07g1587 406 Gene3D Cytidine Deaminase, domain 2 47 266 - -
Clacu07g1587 406 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 74 179 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1587 K03247 - csv:101211860 624.394