Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1605 ATGATTATGGCTCTTCCCATTTCCAGATTACTCTCTCTCTTTCCCCTTCTACCCATTTTTCTTGCCTTCTCTACCTTTCTTGTTTCAACAGAAGCATATGATCCACTTGATCCAAATGGAAACATTACTATCAAATGGGATATTATGAGCTGGACTGCTGATGGATATGTTGGTGTTGTTACCCTGTATAATTTCCAACAATACCGGCATATTCAAACACCGGGATGGTCTCTCCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAACATGTTGGGAGGCCAAGCAACAGAGCAAGGTGATTGTTCTAGATTTAAAGGGAACATCCCCCATTGCTGCAAGAGGGATCCAACAGTTGTTGACCTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTTCTTAACTCCTGGGTGCAAGATCCAGCTACTGCAGTGAGCTCATTTCAGCTCACCGTTGGTTCAGCCGGAACCTCGAATAAAACTGTCCGACTGCCAAAGAACTTTACCTTAAAAGCACCTGGACCTGGTTATACCTGTGGACCGGCCAAAATTGTTAAACCGAGCAAATTCGTTTCCCCCGACAAACGGAGAGTTACACAGGCATTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAAACTCCTACTTGCTGTGTCTCGCTGTCGTCATTTTACAACGACACAATTGTTTCTTGCCCGAAGTGCTCCTGTGGCTGCCAAGGCAACTTGAATGCACTCCAAAGTTGTGTGGAGCCAAATTCTCCGTATTTAGCCTCTGTTGTTAGCAGTGCTAGTTCTAGCAAGAGCAATTTGACACCATTGGTTCAGTGTACTGGCCATATGTGCCCGATTCGAGTTCACTGGCATGTGAAGCTTAACTATAAGGAGTATTGGAGGGTGAAGATCACAATTACAAACTTCAATTACATGATGAATTATACAAATTGGAACTTAGTTGTTCAACATCCGAACTTCGACAATCTAACACAGATTTTCAGCTTCAACTACCAGTCAATCAATCCGTATGGAACAATAAATGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAACGATTTGCTCATGCAAGCAGGTCCTCTTGGGAATGTGCAGACAGAGCTACTATTCCGGAAGGATCAATCGACTTTCACATTTGACAAAGGCTGGGCTTTTCCTCGGAGGATCTATTTTAATGGCGACAATTGTGTTATGCCACCTCCGGAAGCCTATCCCTACTTACCAAACACAGGTTCTAAGCAAGATGTCTCGATGTTTACTATGCTATTGCTGATTTCCTTGACTCTCTTGTCTTTCCACCATTCGTTTGCATAA 1368 43.35 MIMALPISRLLSLFPLLPIFLAFSTFLVSTEAYDPLDPNGNITIKWDIMSWTADGYVGVVTLYNFQQYRHIQTPGWSLQWKWAKKEVIWNMLGGQATEQGDCSRFKGNIPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPATAVSSFQLTVGSAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSKFVSPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQGNLNALQSCVEPNSPYLASVVSSASSSKSNLTPLVQCTGHMCPIRVHWHVKLNYKEYWRVKITITNFNYMMNYTNWNLVVQHPNFDNLTQIFSFNYQSINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQDVSMFTMLLLISLTLLSFHHSFA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30624564 30627447 + ClG42_07g0160500.10 Clacu07g1605 254203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1605 455 PIRSF COBRA 6 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu07g1605 455 PANTHER PROTEIN COBRA 22 444 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Clacu07g1605 455 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1655 Clacu-Chr6:27318699 Clacu07g1605 Clacu-Chr7:30624564 1.60E-219 dispersed
Clacu07g1605 Clacu-Chr7:30624564 Clacu07g1606 Clacu-Chr7:30627999 6.40E-184 tandem
Clacu02g0457 Clacu-Chr2:4138338 Clacu07g1605 Clacu-Chr7:30624564 1.80E-117 transposed
Clacu05g0739 Clacu-Chr5:6212809 Clacu07g1605 Clacu-Chr7:30624564 6.40E-36 transposed
Clacu10g0543 Clacu-Chr10:6565218 Clacu07g1605 Clacu-Chr7:30624564 3.90E-28 transposed
Clacu04g1222 Clacu-Chr4:26388732 Clacu07g1605 Clacu-Chr7:30624564 7.30E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1605 - - - 0.0