Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1606 ATGAGGTTGTTCATCTCAGCTGTCTTCCTTTTTGTCTTATTTTCTCATGGAGCTGCATATGATCCGTTGGATCCGAATGGGAACATTACGATCAAATGGGACATCATGTCTTGGACGCCTGATGGCTATGTGGCGGTAGTTACGTTGAACAACTTCCAAATGTACCGGCATATAATGAGCCCTGGTTGGACGATGGGGTGGACTTGGGCAAAAAAGGAAGTGATATGGTCGATGGTGGGGTCGCAGACGACGGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTGCTGCAAGAAAAACCCCACCGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAATTTACAAACTGCTGCAAAGGTGGGGTTGTGCCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTTAGTGTTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAGCTCCCCAAGAACTTCACTTTGCTTGGTCCCGGCCCCGGATACACTTGTGGACCTGCAAAGGTTGTGCCTTCCACCACTTTCCTCACACCTGACCGCCGCCGCAAAACTCAAGCTCTGATGACTTGGAACGTGACCTGCACTTACTCTCAGTTTCTAGCAAGAAAGAATCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAACGATACGATCACATCTTGTCCGTCTTGCGCCTGTGGTTGCCAAAACAAGAACAACTGTGTCCAGAGTGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCGTTGCTGCATTGCACACATCACATGTGCCCCGTTCGAGTTCACTGGCACGTAAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCGCTTTGGTCTCTCGTTGTCCAGCACCCAAATCTGAACAATGTAACCCAAGTTTTCAGCTTCGACTACAAACCACTTGTTCCCTATGGATCAATCAATGACACAGGAATGTTTTACGGGATGAAGTTCTATAACGACCTTCTCATGGAAGCGGGGCCATTTGGGAATGTACAATCAGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACTTTCAAGCAAGGATGGGCATTCCCTCGAAAAGTTTACTTCAATGGTGACGAGTGCATGCTTCCACCACCCGACACATACCCATTCCTGCCAAACACTGCCCGGGAAAGGCCAGTTGCCGTCTCATCTTCAATTGCTTTGCTGCTGCTCTTCATGCTGTTAGCTATTTGCTGA 1302 47.47 MRLFISAVFLFVLFSHGAAYDPLDPNGNITIKWDIMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVPAWGQDPQAAVSAFQLSVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKNNCVQSDSKILKLVGINTPRKDNAPLLHCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYGSINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNTARERPVAVSSSIALLLLFMLLAIC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30627999 30629744 - ClG42_07g0160600.10 Clacu07g1606 254204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1606 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu07g1606 433 PANTHER PROTEIN COBRA 6 426 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Clacu07g1606 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1606 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1222 Clacu-Chr4:26388732 Clacu07g1606 Clacu-Chr7:30627999 1.80E-169 dispersed
Clacu06g1654 Clacu-Chr6:27315643 Clacu07g1606 Clacu-Chr7:30627999 1.20E-222 dispersed
Clacu07g1605 Clacu-Chr7:30624564 Clacu07g1606 Clacu-Chr7:30627999 6.40E-184 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1655 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Clacu07g1605 . 44 450 COBRA Gene Family AT5G60920 75.4 3.3e-200 694.5
Clacu06g1654 . 55 452 COBRA Gene Family AT5G60920 69.1 6.6e-180 627.1
Clacu07g1606 . 31 426 COBRA Gene Family AT5G60920 68.2 1.5e-179 625.9
Clacu04g1222 . 37 437 COBRA Gene Family AT5G60920 60.0 7.6e-152 533.9
Clacu05g1104 . 31 425 COBRA Gene Family AT5G60920 54.5 1.3e-130 463.4
Clacu06g1655 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Clacu07g1605 . 19 448 COBRA Gene Family AT3G02210 74.2 1.8e-202 702.2
Clacu07g1606 . 5 429 COBRA Gene Family AT3G02210 66.8 3.3e-180 628.2
Clacu06g1654 . 27 452 COBRA Gene Family AT3G02210 66.1 6.1e-179 624.0
Clacu04g1222 . 11 430 COBRA Gene Family AT3G02210 58.7 3.1e-154 542.0
Clacu05g1104 . 1 420 COBRA Gene Family AT3G02210 55.0 1.3e-139 493.4
Clacu06g1655 . 21 446 COBRA Gene Family AT3G29810 75.0 3.9e-202 701.0
Clacu07g1605 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Clacu07g1606 . 14 428 COBRA Gene Family AT3G29810 66.0 6.2e-176 614.0
Clacu06g1654 . 38 436 COBRA Gene Family AT3G29810 66.7 1.5e-174 609.4
Clacu04g1222 . 25 435 COBRA Gene Family AT3G29810 58.6 1.4e-151 533.1
Clacu05g1104 . 13 430 COBRA Gene Family AT3G29810 55.1 7.2e-140 494.2
Clacu02g0457 . 616 1026 COBRA Gene Family AT3G29810 50.1 2.2e-120 429.5
Clacu06g1654 . 32 363 COBRA Gene Family AT5G15630 83.1 3.9e-178 620.9
Clacu07g1606 . 9 339 COBRA Gene Family AT5G15630 82.5 1.6e-176 615.5
Clacu06g1655 . 31 361 COBRA Gene Family AT5G15630 73.2 1.6e-150 529.3
Clacu07g1605 . 29 358 COBRA Gene Family AT5G15630 68.5 7.5e-145 510.4
Clacu04g1222 . 15 341 COBRA Gene Family AT5G15630 62.1 1.3e-133 473.0
Clacu05g1104 . 19 341 COBRA Gene Family AT5G15630 50.3 7.6e-97 350.9
Clacu06g1655 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Clacu07g1605 . 27 220 COBRA Gene Family AT5G60950 60.0 5.1e-64 241.1
Clacu07g1606 . 27 207 COBRA Gene Family AT5G60950 57.5 1.9e-58 222.6
Clacu06g1654 . 51 231 COBRA Gene Family AT5G60950 57.5 4.2e-58 221.5
Clacu04g1222 . 33 213 COBRA Gene Family AT5G60950 51.9 1.0e-48 190.3
Clacu05g1104 . 12 413 COBRA Gene Family AT1G09790 60.2 6.9e-151 530.8
Clacu07g1605 . 25 428 COBRA Gene Family AT1G09790 54.0 2.6e-134 475.7
Clacu06g1654 . 41 434 COBRA Gene Family AT1G09790 53.4 2.9e-133 472.2
Clacu06g1655 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Clacu07g1606 . 3 410 COBRA Gene Family AT1G09790 51.1 9.7e-129 457.2
Clacu05g0739 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Clacu10g0543 . 59 667 COBRA Gene Family AT4G16120 54.2 7.3e-205 710.7
Clacu05g1625 . 1 469 COBRA Gene Family AT4G16120 55.5 1.8e-163 573.2
Clacu05g0739 . 11 649 COBRA Gene Family AT3G16860 63.1 3.0e-243 838.2
Clacu10g0543 . 59 656 COBRA Gene Family AT3G16860 52.8 8.8e-195 677.2
Clacu05g1625 . 1 454 COBRA Gene Family AT3G16860 53.7 1.0e-150 530.8
Clacu05g0739 . 7 639 COBRA Gene Family AT5G49270 61.0 7.0e-240 827.0
Clacu10g0543 . 59 654 COBRA Gene Family AT5G49270 52.0 3.3e-197 685.3
Clacu05g1625 . 4 449 COBRA Gene Family AT5G49270 53.9 2.9e-153 539.3
Clacu10g0543 . 55 674 COBRA Gene Family AT3G20580 62.6 1.1e-248 856.3
Clacu05g0739 . 27 627 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Clacu05g1625 . 1 469 COBRA Gene Family AT3G20580 64.5 2.0e-197 686.0
Clacu05g1626 . 22 172 COBRA Gene Family AT3G20580 53.0 2.9e-44 177.2
Clacu10g0543 . 59 675 COBRA Gene Family AT4G27110 63.1 2.0e-242 835.5
Clacu05g0739 . 24 645 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
Clacu05g1625 . 1 460 COBRA Gene Family AT4G27110 63.9 3.8e-185 645.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73