Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu07g1610 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAACTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTGTCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGTATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACTGCTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 43.18 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30661794 30669106 + ClG42_07g0161000.10 Clacu07g1610 254208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu07g1610 246 FunFam MADS-box transcription factor 1 13 87 - -
Clacu07g1610 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 Coils Coil 150 170 - -
Clacu07g1610 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu07g1610 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu07g1610 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu07g1610 246 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu07g1610 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu07g1610 246 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1219 Clacu-Chr4:26354589 Clacu07g1610 Clacu-Chr7:30661794 1.60E-72 dispersed
Clacu05g0903 Clacu-Chr5:7927172 Clacu07g1610 Clacu-Chr7:30661794 1.60E-42 dispersed
Clacu06g0213 Clacu-Chr6:2427328 Clacu07g1610 Clacu-Chr7:30661794 4.40E-83 dispersed
Clacu06g0214 Clacu-Chr6:2445461 Clacu07g1610 Clacu-Chr7:30661794 1.00E-21 dispersed
Clacu07g1610 Clacu-Chr7:30661794 Clacu08g1210 Clacu-Chr8:22032334 8.50E-42 dispersed
Clacu07g1610 Clacu-Chr7:30661794 Clacu07g1611 Clacu-Chr7:30684055 1.00E-42 tandem
Clacu11g1780 Clacu-Chr11:29023710 Clacu07g1610 Clacu-Chr7:30661794 2.30E-27 transposed
Clacu04g1218 Clacu-Chr4:26338710 Clacu07g1610 Clacu-Chr7:30661794 7.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48093 PF01486 K-box 2.70E-27 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu07g1610 K09264 - csv:101208204 472.241